Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NDO76_RS12370 Genome accession   NZ_CP098743
Coordinates   2566226..2567470 (-) Length   414 a.a.
NCBI ID   WP_033627584.1    Uniprot ID   -
Organism   Enterococcus faecalis strain M9     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2561226..2572470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDO76_RS12350 (NDO76_12350) - 2561696..2562082 (-) 387 WP_002359008.1 YlbF family regulator -
  NDO76_RS12355 (NDO76_12355) - 2562156..2562953 (-) 798 WP_002354864.1 TIGR00282 family metallophosphoesterase -
  NDO76_RS12360 (NDO76_12360) rny 2563113..2564669 (-) 1557 WP_002354863.1 ribonuclease Y -
  NDO76_RS12365 (NDO76_12365) recA 2565066..2566112 (-) 1047 WP_002354860.1 recombinase RecA Machinery gene
  NDO76_RS12370 (NDO76_12370) cinA 2566226..2567470 (-) 1245 WP_033627584.1 competence/damage-inducible protein A Machinery gene
  NDO76_RS12375 (NDO76_12375) - 2567662..2568861 (+) 1200 WP_016616447.1 hypothetical protein -
  NDO76_RS12380 (NDO76_12380) - 2568941..2569570 (-) 630 WP_002354854.1 NAD(P)-dependent oxidoreductase -
  NDO76_RS12385 (NDO76_12385) - 2569629..2570054 (-) 426 WP_002383201.1 Rrf2 family transcriptional regulator -
  NDO76_RS12390 (NDO76_12390) - 2570143..2570526 (-) 384 WP_002358999.1 YccF domain-containing protein -
  NDO76_RS12395 (NDO76_12395) - 2570690..2571481 (+) 792 WP_016616446.1 hypothetical protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45157.25 Da        Isoelectric Point: 4.6195

>NTDB_id=697657 NDO76_RS12370 WP_033627584.1 2566226..2567470(-) (cinA) [Enterococcus faecalis strain M9]
MKAEIIAVGTELLLGQVVNTNATFLSEELAALGIDVYYQTVVGDNGGRLETLLTEAEQRSDLIVLCGGLGPTEDDLTKQV
VAQHLHKSLVEDQEGLNRLHQFFQQSKRPMTENNLRQVLAIEGGQVLQNPTGLAVGSFVTEGTTSYLLLPGPPNELIPMF
QQAARPLLIDAFPQEEQLISRVLRFYGIGESQLVTEIQSLIANQTNPTIAPYAKPNEVTLRLTVKTKDLVAGEELLTATE
EKVLAKVGDYFYGYGDDNSLAKVTVDLLLQTGQTVTAAESLTAGLFQSTLGEIAGASKIFKGGFVTYSQETKENFLGISH
ELLEEHGTVSEACAKEMAEKARQLAKSNYGLSFTGVAGDPIEGQPTGTVWIGLAEEGQPTVAECFHFNRDRNYIRQSAVM
RGLDLLRRRIINKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=697657 NDO76_RS12370 WP_033627584.1 2566226..2567470(-) (cinA) [Enterococcus faecalis strain M9]
ATGAAAGCAGAAATCATTGCAGTCGGAACAGAGTTATTACTTGGACAAGTAGTGAATACCAACGCCACCTTTTTATCAGA
AGAGTTAGCTGCGCTAGGCATCGATGTTTACTATCAGACCGTTGTTGGCGATAACGGCGGCCGCTTAGAAACGCTACTAA
CAGAAGCAGAACAAAGAAGTGATTTAATTGTCCTTTGTGGAGGGCTAGGACCTACAGAAGACGATTTAACCAAGCAAGTT
GTCGCACAACATCTCCATAAATCATTAGTAGAAGATCAAGAAGGATTGAACCGCTTGCACCAGTTTTTCCAACAGTCTAA
GCGGCCAATGACGGAAAATAATCTACGACAAGTGTTAGCTATTGAAGGTGGACAAGTTCTTCAAAACCCGACAGGATTAG
CGGTTGGTTCTTTCGTAACAGAAGGCACAACAAGCTATTTGCTCTTACCAGGGCCGCCCAATGAATTAATTCCGATGTTC
CAACAAGCGGCACGACCTTTATTGATTGATGCGTTTCCACAAGAAGAACAATTGATTTCAAGAGTCTTGCGTTTTTATGG
GATTGGTGAATCACAGCTGGTGACCGAGATTCAATCGTTGATTGCGAACCAAACGAATCCAACCATTGCGCCTTATGCTA
AGCCTAATGAAGTGACACTTCGTTTAACAGTTAAAACAAAAGACTTAGTAGCTGGCGAAGAATTATTAACAGCGACGGAA
GAAAAGGTTTTAGCTAAAGTGGGAGACTATTTTTATGGGTATGGGGATGACAATAGTTTAGCCAAGGTAACAGTGGATTT
GTTATTACAAACCGGACAAACCGTCACGGCTGCTGAGAGCCTCACCGCTGGCCTATTCCAAAGTACACTGGGGGAAATTG
CGGGTGCTTCGAAGATTTTTAAGGGAGGCTTCGTGACGTATTCGCAAGAAACAAAAGAGAACTTTTTAGGAATTTCTCAT
GAACTTTTAGAAGAACATGGCACGGTAAGTGAAGCGTGTGCCAAAGAAATGGCAGAGAAAGCGCGTCAGTTAGCTAAATC
TAACTATGGTTTATCATTTACTGGGGTCGCTGGTGACCCAATCGAAGGTCAACCGACAGGCACTGTTTGGATTGGGCTGG
CGGAAGAAGGCCAACCAACCGTTGCAGAATGTTTCCATTTTAACCGTGACCGAAATTATATTAGACAGAGTGCGGTTATG
CGAGGGTTAGATCTTTTGCGACGCCGAATCATTAATAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(258-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

51.773

100

0.529
  cinA Streptococcus mutans UA159

52.392

100

0.529
  cinA Streptococcus mitis NCTC 12261

51.537

100

0.527
  cinA Streptococcus pneumoniae TIGR4

50.827

100

0.519
  cinA Streptococcus pneumoniae D39

50.591

100

0.517
  cinA Streptococcus pneumoniae R6

50.355

100

0.514
  cinA Streptococcus pneumoniae Rx1

50.355

100

0.514
  cinA Bacillus subtilis subsp. subtilis str. 168

48.522

98.068

0.476
  cinA Streptococcus suis isolate S10

44.039

99.275

0.437