Detailed information NTG0696602

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: NDQ71_RS08495
• Genome accession: NZ_CP098523
• Coordinates: 1797416..1798642 (+)
• Length: 408 a.a.
• NCBI ID: WP_301562580.1
• Uniprot ID: -
• Organism: Pseudoalteromonas sp. KG3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
IS/Tn	1795780..1796916	1797416..1798642	flank	500

Gene organization within MGE regions

Location: 1795780..1798642

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDQ71_RS08485 (NDQ71_08470)	-	1795780..1796916 (-)	1137	WP_024602346.1	ISAs1 family transposase	-
NDQ71_RS08490 (NDQ71_08475)	-	1796997..1797281 (+)	285	WP_301562579.1	pilin	-
NDQ71_RS08495 (NDQ71_08480)	pilC	1797416..1798642 (+)	1227	WP_301562580.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 408 a.a.
• Molecular weight: 44276.38 Da
• Isoelectric Point: 9.7592

>NTDB_id=696602 NDQ71_RS08495 WP_301562580.1 1797416..1798642(+) (pilC) [Pseudoalteromonas sp. KG3]
MSKKHTPNDTSTFQWVGVSARGKKLEGELTGSSVALVKAQLRKQGITPSKVKRKAKPLFGVRMQAITPKDIALVTRQIAT
MLMAGVPLIQSIEMIGTGATNKSVSKLMATIGDEVKAGQPLSLALRKHPRYFDDLYCDLVASGEQSGALDKIFDRVALYK
EKSEALKSKIKKAMFYPIAVLVVALIVTSILLIFVVPQFQDIFAGFGAELPAFTLMVIAISEFMQEYWWMMLIAIVGFGW
AYKEALLKSKKLRDATDRAILKLPVIGMILNKAAVARYARTLSTTFAAGVPLVDALDSAAGASGNAVYRYAILDIKAEVS
SGNQMNWAMRNSKIFPDMVIQMVAIGEESGSLDDMLAKVATIYEQEVDDAVDGLSSLLEPLIMAVLGVLVGGLIIAMYLP
IFQLGSVI

Nucleotide

• Length: 1227 bp

>NTDB_id=696602 NDQ71_RS08495 WP_301562580.1 1797416..1798642(+) (pilC) [Pseudoalteromonas sp. KG3]
ATGTCAAAAAAACACACTCCTAACGATACCTCAACCTTTCAATGGGTTGGAGTTAGTGCTCGAGGGAAAAAGCTTGAAGG
TGAATTAACTGGCTCTAGTGTAGCCCTTGTCAAAGCCCAACTACGAAAACAAGGCATCACCCCATCTAAAGTAAAGCGTA
AAGCCAAGCCTTTGTTCGGCGTGCGCATGCAGGCTATTACCCCCAAAGATATTGCTTTAGTGACGCGGCAAATTGCCACT
ATGCTAATGGCGGGCGTCCCGTTGATTCAATCAATAGAAATGATTGGCACCGGCGCTACTAATAAAAGTGTTAGTAAACT
GATGGCAACTATTGGCGATGAAGTTAAAGCCGGTCAACCGCTATCATTAGCGCTTAGAAAGCACCCCCGTTATTTTGATG
ATTTATATTGCGACTTAGTGGCCTCGGGCGAGCAATCTGGCGCACTGGATAAAATATTCGATCGCGTTGCGCTTTATAAA
GAAAAATCAGAAGCGCTGAAATCAAAAATTAAAAAAGCCATGTTTTACCCTATAGCGGTATTGGTAGTGGCTCTGATTGT
TACCTCAATTCTACTTATATTTGTAGTACCACAATTCCAAGATATTTTTGCTGGTTTTGGTGCTGAACTTCCCGCATTTA
CTTTAATGGTGATTGCCATCTCTGAGTTTATGCAAGAATATTGGTGGATGATGCTAATTGCCATTGTTGGCTTTGGCTGG
GCTTACAAAGAAGCACTACTAAAAAGTAAAAAGCTGCGCGATGCTACCGATCGCGCAATTTTGAAGCTGCCTGTGATTGG
TATGATTTTAAATAAAGCCGCGGTGGCACGTTATGCCCGTACACTTTCGACCACTTTTGCCGCAGGTGTGCCATTAGTTG
ATGCCCTCGATTCTGCAGCTGGCGCCTCTGGTAACGCGGTTTACCGTTATGCTATTTTAGATATTAAAGCTGAAGTAAGC
TCAGGTAACCAAATGAACTGGGCGATGCGCAATTCTAAAATATTCCCCGATATGGTAATACAAATGGTGGCCATTGGTGA
AGAATCAGGCTCTTTGGATGATATGCTGGCAAAAGTTGCGACGATTTATGAGCAAGAAGTTGATGATGCAGTAGATGGTT
TATCAAGCCTTTTAGAGCCGCTTATCATGGCTGTGCTTGGTGTATTAGTAGGTGGTTTGATCATCGCTATGTACTTACCT
ATCTTCCAACTTGGGTCGGTTATATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (279-400)

• Type II secretion system (T2SS), protein F (T2SSF) (75-197)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	62.745	100	0.627
pilC	Acinetobacter baumannii D1279779	56.784	97.549	0.554
pilC	Acinetobacter baylyi ADP1	55.416	97.304	0.539
pilC	Legionella pneumophila strain ERS1305867	54.912	97.304	0.534
pilC	Vibrio cholerae strain A1552	45.5	98.039	0.446
pilG	Neisseria meningitidis 44/76-A	43.655	96.569	0.422
pilG	Neisseria gonorrhoeae MS11	43.401	96.569	0.419
pilC	Vibrio campbellii strain DS40M4	42.821	97.304	0.417
pilC	Thermus thermophilus HB27	37.186	97.549	0.363