Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   LM6179_RS04940 Genome accession   NZ_CP098509
Coordinates   944476..945720 (+) Length   414 a.a.
NCBI ID   WP_012951603.1    Uniprot ID   -
Organism   Listeria monocytogenes 6179     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 939476..950720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM6179_RS04920 (LM6179_02137) yfmH 940650..941936 (+) 1287 WP_003732282.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  LM6179_RS04925 (LM6179_02138) ymfI 942028..942759 (+) 732 WP_015454687.1 elongation factor P 5-aminopentanone reductase -
  LM6179_RS04930 (LM6179_02139) - 942810..943739 (+) 930 WP_003723920.1 RodZ family helix-turn-helix domain-containing protein -
  LM6179_RS04935 (LM6179_02140) pgsA 943829..944407 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  LM6179_RS04940 (LM6179_02141) cinA 944476..945720 (+) 1245 WP_012951603.1 competence/damage-inducible protein A Machinery gene
  LM6179_RS04945 (LM6179_02142) recA 945993..947039 (+) 1047 WP_003732286.1 recombinase RecA Machinery gene
  LM6179_RS04950 (LM6179_02143) rny 947340..948902 (+) 1563 WP_003721904.1 ribonuclease Y -
  LM6179_RS04955 (LM6179_02144) - 949016..949513 (+) 498 WP_010990112.1 GNAT family N-acetyltransferase -
  LM6179_RS04960 (LM6179_02145) - 949519..950322 (+) 804 WP_003732288.1 TIGR00282 family metallophosphoesterase -
  LM6179_RS04965 (LM6179_02146) - 950339..950701 (+) 363 WP_003744056.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45632.82 Da        Isoelectric Point: 4.8669

>NTDB_id=696499 LM6179_RS04940 WP_012951603.1 944476..945720(+) (cinA) [Listeria monocytogenes 6179]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAEKRSDILIFTGGLGPTEDDITKQ
ILADHLQKQLVEDEYHMNKINEYFASRNRSMTENNKLQAVIIKDSVVLNNDYGFAAGMYLKENNHTYVLLPGPPSEMKPM
FTKYANPLLLSENGNQNILESKIMRFFGIGESQLAADLNDLIVNQVNPTIATYAGDNEVVVRITATAKTKEEASSLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGHETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=696499 LM6179_RS04940 WP_012951603.1 944476..945720(+) (cinA) [Listeria monocytogenes 6179]
ATGGCAAGTGCAGAAATCATTGCAGTAGGAACTGAACTATTACTTGGGCAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCTGACGGAATATATGTATATCATCATACAGTAGTTGGAGATAATCCAACACGTTTAAAAGAAGTAA
TCGAAATTGCTGAAAAGCGCAGTGATATTTTAATCTTTACTGGGGGACTTGGACCAACTGAAGATGATATAACAAAACAA
ATCTTAGCTGATCATTTACAAAAACAGTTAGTAGAAGATGAATATCATATGAATAAAATTAATGAGTATTTCGCTTCCAG
AAACAGAAGCATGACCGAAAACAACAAATTACAAGCGGTTATTATTAAAGATTCCGTGGTATTAAATAATGACTACGGCT
TTGCAGCTGGGATGTACTTAAAAGAAAATAACCATACTTACGTTTTGTTACCAGGACCACCATCTGAAATGAAGCCAATG
TTTACAAAATATGCTAACCCACTTCTTTTAAGTGAAAATGGCAATCAAAATATTTTAGAATCCAAAATCATGCGTTTTTT
TGGTATTGGAGAATCGCAATTAGCTGCTGATTTAAACGATTTGATTGTTAATCAAGTCAACCCAACGATTGCGACATATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGTTCTCTTGTGAAGGATACA
GAGGAGGAAATATTGCGCCGAGATGGCACTTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCCGCAGAAAGTTTTACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAAGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCACCT
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCTGAATGTGCGAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCGGATAGTCTAGAAGGCCATCCTGCTGGCACTATTTGGATTGGGC
TGAGCGTTAAAGGTCATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGACGTGCCGTA
AAACAAGGCTTTCAGTTAATTAAGCAATTTTTAGACGCAAATTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Competence-damaged protein (CinA)

(259-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Bacillus subtilis subsp. subtilis str. 168

50.367

98.792

0.498
  cinA Streptococcus pneumoniae TIGR4

48.571

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus mutans UA159

49.272

99.517

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386