Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NDK23_RS17730 Genome accession   NZ_CP098483
Coordinates   3784638..3785897 (+) Length   419 a.a.
NCBI ID   WP_088430641.1    Uniprot ID   -
Organism   Stenotrophomonas maltophilia strain 142     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3779638..3790897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDK23_RS17710 (NDK23_17705) pilR 3779862..3781235 (+) 1374 WP_005410795.1 sigma-54 dependent transcriptional regulator Regulator
  NDK23_RS17715 (NDK23_17710) pilB 3781361..3783094 (-) 1734 WP_005414305.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NDK23_RS17720 (NDK23_17715) - 3783317..3783730 (-) 414 WP_099527264.1 pilin -
  NDK23_RS17725 (NDK23_17720) pilA/pilAI 3783863..3784285 (-) 423 WP_099527265.1 pilin Machinery gene
  NDK23_RS17730 (NDK23_17725) pilC 3784638..3785897 (+) 1260 WP_088430641.1 type II secretion system F family protein Machinery gene
  NDK23_RS17735 (NDK23_17730) - 3785905..3786768 (+) 864 WP_005410800.1 A24 family peptidase -
  NDK23_RS17740 (NDK23_17735) coaE 3786780..3787391 (+) 612 WP_049452340.1 dephospho-CoA kinase -
  NDK23_RS17745 (NDK23_17740) - 3787651..3788037 (-) 387 WP_005410802.1 hypothetical protein -
  NDK23_RS17750 (NDK23_17745) - 3788520..3789848 (-) 1329 WP_005410803.1 HAMP domain-containing sensor histidine kinase -
  NDK23_RS17755 (NDK23_17750) - 3789853..3790530 (-) 678 WP_005410804.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45687.91 Da        Isoelectric Point: 10.0500

>NTDB_id=696199 NDK23_RS17730 WP_088430641.1 3784638..3785897(+) (pilC) [Stenotrophomonas maltophilia strain 142]
MSVSGSAIKKEPVARSTAELQPFVWEGTDKRGVKMKGEQTAKNANLLRAELRRQGINPGVVKPKAKPLFGAAGSKISPKD
IAFFSRQMATMMKSGVPIVSALEIIGSGHKNPRMKKMVDSLRTDIEGGSSLYEAVSKHPVQFDELYRNLVKAGEGAGVLE
TVLDTVATYKENIEALKGKIRKAMFYPAMVLAVALVVSGILLVWVVPQFEDVFKGFGAELPAFTQMIVNMSRFMVSWWWL
VLFVIIGSIMGFIATYKRSPNLQHSMDRLILKVPVIGQLMHNSAIARFSRTTAVTFKAGVPLVEALGIVAGATGNTVYEE
AILRMRDDVSVGYPVNVAMKQRNLFPHMVIQMTGIGEEAGALDAMLFKVAEYYEQEVNNAVDALSSLLEPIIMVIIGTIV
GGMVIGMYLPIFKLASVVG

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=696199 NDK23_RS17730 WP_088430641.1 3784638..3785897(+) (pilC) [Stenotrophomonas maltophilia strain 142]
ATGTCTGTCAGTGGCAGTGCGATTAAGAAGGAACCCGTGGCGCGCAGCACCGCGGAACTGCAGCCGTTTGTCTGGGAGGG
GACTGACAAGCGGGGCGTCAAGATGAAAGGCGAGCAGACTGCGAAGAACGCGAACCTGCTGAGGGCCGAGCTTCGTCGCC
AGGGCATCAATCCTGGCGTGGTCAAGCCCAAGGCCAAGCCGCTGTTCGGCGCGGCAGGCAGCAAGATATCGCCGAAGGAT
ATTGCGTTCTTCAGCCGCCAGATGGCGACGATGATGAAATCCGGTGTTCCGATCGTATCGGCGCTGGAGATCATCGGCAG
CGGGCACAAGAACCCGCGCATGAAGAAGATGGTTGATTCGCTTCGGACCGATATCGAGGGCGGCTCGTCGCTCTATGAAG
CCGTCAGCAAGCACCCGGTCCAGTTCGACGAGCTGTATCGTAATCTGGTCAAGGCCGGGGAAGGCGCCGGTGTACTGGAG
ACGGTGCTTGATACCGTCGCTACCTACAAAGAGAACATCGAAGCCCTGAAGGGCAAGATCCGCAAGGCGATGTTCTATCC
GGCCATGGTGCTGGCCGTCGCACTGGTCGTCAGCGGCATCCTGCTGGTGTGGGTGGTTCCGCAGTTCGAAGACGTCTTCA
AGGGTTTCGGCGCCGAGCTGCCCGCCTTCACCCAGATGATCGTCAACATGTCCCGGTTCATGGTGTCGTGGTGGTGGCTG
GTCCTGTTCGTCATCATCGGCTCAATTATGGGATTCATCGCGACCTACAAACGCTCACCCAATCTGCAGCACAGCATGGA
CCGGCTGATCCTGAAAGTGCCGGTCATCGGCCAGCTCATGCACAACAGTGCCATCGCCCGTTTCTCGCGCACCACTGCGG
TGACCTTCAAGGCCGGCGTGCCGTTGGTGGAGGCGCTGGGCATCGTGGCCGGCGCTACCGGCAATACCGTGTACGAAGAG
GCGATCCTGCGCATGCGCGACGATGTTTCGGTGGGCTATCCGGTGAACGTAGCGATGAAGCAGCGCAACCTGTTCCCGCA
TATGGTGATCCAGATGACCGGTATCGGCGAAGAGGCTGGTGCTCTGGATGCGATGCTGTTCAAGGTGGCCGAGTACTATG
AGCAGGAGGTCAACAATGCCGTTGACGCCCTGAGCAGCCTGCTGGAACCGATCATCATGGTGATCATTGGTACCATCGTC
GGCGGCATGGTCATCGGCATGTACCTGCCGATCTTCAAGCTCGCTTCCGTCGTCGGATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(84-207)

Type II secretion system (T2SS), protein F (T2SSF)

(288-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baylyi ADP1

51.97

96.897

0.504
  pilC Pseudomonas stutzeri DSM 10701

53.03

94.511

0.501
  pilC Acinetobacter baumannii D1279779

50.49

97.375

0.492
  pilC Legionella pneumophila strain ERS1305867

50.743

96.42

0.489
  pilG Neisseria gonorrhoeae MS11

43.358

95.227

0.413
  pilG Neisseria meningitidis 44/76-A

42.857

95.227

0.408
  pilC Vibrio cholerae strain A1552

41.379

96.897

0.401
  pilC Vibrio campbellii strain DS40M4

40.887

96.897

0.396