Detailed information NTG0696196

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: NDK23_RS17710
• Genome accession: NZ_CP098483
• Coordinates: 3779862..3781235 (+)
• Length: 457 a.a.
• NCBI ID: WP_005410795.1
• Uniprot ID: A0A854E393
• Organism: Stenotrophomonas maltophilia strain 142
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3774862..3786235

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NDK23_RS17695 (NDK23_17690)	sucD	3775764..3776639 (-)	876	WP_005410793.1	succinate--CoA ligase subunit alpha	-
NDK23_RS17700 (NDK23_17695)	sucC	3776661..3777830 (-)	1170	WP_004154430.1	ADP-forming succinate--CoA ligase subunit beta	-
NDK23_RS17705 (NDK23_17700)	-	3778188..3779801 (+)	1614	WP_005410794.1	ATP-binding protein	-
NDK23_RS17710 (NDK23_17705)	pilR	3779862..3781235 (+)	1374	WP_005410795.1	sigma-54 dependent transcriptional regulator	Regulator
NDK23_RS17715 (NDK23_17710)	pilB	3781361..3783094 (-)	1734	WP_005414305.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NDK23_RS17720 (NDK23_17715)	-	3783317..3783730 (-)	414	WP_099527264.1	pilin	-
NDK23_RS17725 (NDK23_17720)	pilA/pilAI	3783863..3784285 (-)	423	WP_099527265.1	pilin	Machinery gene
NDK23_RS17730 (NDK23_17725)	pilC	3784638..3785897 (+)	1260	WP_088430641.1	type II secretion system F family protein	Machinery gene

Sequence

Protein

• Length: 457 a.a.
• Molecular weight: 49515.76 Da
• Isoelectric Point: 6.4407

>NTDB_id=696196 NDK23_RS17710 WP_005410795.1 3779862..3781235(+) (pilR) [Stenotrophomonas maltophilia strain 142]
MNETRSALVVDDERDIRELLVLTLGRMGLRISTAANLAEARELLASNPYDLCITDMRLPDGNGIELVSEIAQHYPRTPVA
MITAFGSMDLAVEALKAGAFDFVSKPVDISVLRGLVKHALELNNAERPAPGPNAEQGGRLLGHSQAMDVLRTTIGKVARS
QAPVYILGESGVGKELVARTIHAQGARAAGPFVPVNCGAIPGELMESEFFGHRKGSFSGAHADKPGLFQAAHGGTLFLDE
VAELPLQMQVKLLRAIQEKSVRAVGAANEEPVDVRILSATHKDLAELVEDGRFRHDLYYRINVIELKVPPLRERRQDLPE
LAAAVLARLARSHGRATPLLAPSALEALAQYAFPGNVRELENILERALALAEEDCIGADDLRLPQHAPRAPGSAAPAEAV
ADLQPGSAALPSYIEQLERSAIQRALEENRWNKTRTAAQLGITFRALRYKLKKLGME

Nucleotide

• Length: 1374 bp

>NTDB_id=696196 NDK23_RS17710 WP_005410795.1 3779862..3781235(+) (pilR) [Stenotrophomonas maltophilia strain 142]
ATGAATGAAACCCGCAGCGCCCTCGTCGTCGACGACGAACGCGACATCCGCGAACTGCTGGTGCTGACCCTCGGCCGCAT
GGGGCTGCGCATCAGTACCGCCGCCAACCTGGCCGAGGCACGTGAGCTGCTGGCCAGCAATCCGTACGACCTGTGCATCA
CCGACATGCGCCTGCCCGATGGCAACGGCATCGAACTGGTCAGCGAGATCGCCCAGCACTACCCGCGCACGCCGGTGGCG
ATGATCACCGCATTCGGCAGCATGGATCTCGCTGTGGAGGCACTGAAGGCCGGTGCGTTCGATTTCGTCAGCAAGCCGGT
GGACATCTCGGTGCTGCGCGGACTGGTCAAGCACGCGCTGGAACTCAACAACGCCGAGCGCCCCGCACCGGGCCCCAACG
CCGAACAGGGCGGACGCCTGCTGGGCCACTCGCAGGCCATGGATGTGCTGCGCACCACCATCGGCAAGGTCGCGCGCAGC
CAGGCGCCGGTCTACATCCTCGGCGAGTCGGGCGTCGGCAAGGAGCTGGTTGCACGCACCATCCATGCCCAGGGCGCGCG
CGCGGCCGGCCCGTTCGTGCCGGTCAACTGCGGCGCCATTCCCGGCGAGCTGATGGAGAGCGAATTCTTCGGCCACCGCA
AGGGCAGTTTCAGCGGCGCACACGCTGACAAGCCTGGCCTGTTCCAAGCTGCGCATGGCGGCACCCTGTTCCTGGACGAA
GTGGCTGAACTGCCACTGCAGATGCAGGTGAAGCTGCTGCGCGCGATCCAGGAAAAGTCGGTGCGCGCGGTGGGCGCGGC
CAACGAGGAGCCGGTGGATGTCCGCATTCTCTCGGCCACCCACAAGGATCTGGCCGAGCTGGTCGAGGACGGGCGCTTCC
GCCACGACCTGTACTACCGCATCAACGTGATCGAACTGAAGGTGCCGCCGCTGCGCGAGCGCCGCCAGGACCTGCCCGAA
CTGGCCGCGGCCGTGCTGGCCCGATTGGCCCGCAGCCACGGCCGCGCCACCCCGCTGCTGGCGCCGTCGGCGCTGGAAGC
ACTGGCGCAGTACGCGTTCCCGGGCAATGTGCGCGAGCTGGAAAACATCCTGGAGCGTGCGCTGGCCCTGGCCGAGGAAG
ACTGCATCGGCGCCGATGACCTGCGCCTGCCGCAGCACGCGCCGCGTGCACCCGGCAGTGCGGCGCCCGCCGAAGCGGTG
GCCGACCTGCAGCCGGGCAGCGCTGCCCTGCCCTCCTACATCGAGCAGCTCGAGCGCAGCGCCATCCAGCGTGCGCTGGA
AGAGAACCGCTGGAACAAGACCCGTACCGCCGCGCAGCTGGGCATCACCTTCCGTGCGCTGCGCTACAAGCTGAAGAAGC
TGGGGATGGAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-454)

• Response regulator receiver domain (Response_reg) (8-115)

• Sigma-54 interaction domain (Sigma54_activat) (140-306)

3D structure

• AlphaFold DB: A0A854E393

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	63.656	99.344	0.632
pilR	Acinetobacter baumannii strain A118	48.38	100	0.49
luxO	Vibrio cholerae strain A1552	37.079	97.374	0.361