Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NDN13_RS12945 Genome accession   NZ_CP098480
Coordinates   2706616..2708742 (-) Length   708 a.a.
NCBI ID   WP_251118231.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2701616..2713742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS12930 (NDN13_12925) - 2704046..2704912 (-) 867 WP_251115741.1 hypothetical protein -
  NDN13_RS12935 (NDN13_12930) aroB 2704932..2706014 (-) 1083 WP_251115742.1 3-dehydroquinate synthase -
  NDN13_RS12940 (NDN13_12935) aroK 2706039..2706596 (-) 558 WP_004657425.1 shikimate kinase AroK -
  NDN13_RS12945 (NDN13_12940) pilQ 2706616..2708742 (-) 2127 WP_251118231.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN13_RS12950 (NDN13_12945) pilP 2708804..2709331 (-) 528 WP_251115743.1 pilus assembly protein PilP Machinery gene
  NDN13_RS12955 (NDN13_12950) comO 2709334..2710077 (-) 744 WP_251115744.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN13_RS12960 (NDN13_12955) pilN 2710074..2710724 (-) 651 WP_251115745.1 PilN domain-containing protein Machinery gene
  NDN13_RS12965 (NDN13_12960) comM 2710724..2711782 (-) 1059 WP_004657415.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76729.05 Da        Isoelectric Point: 5.9996

>NTDB_id=696156 NDN13_RS12945 WP_251118231.1 2706616..2708742(-) (pilQ) [Acinetobacter sp. C32I]
MNHAFRQFSMGAVAIAVMQVASAQVSMTNIVPMSLADQGTEIRVMFNGLPPQPQAYQLEQPSRLILDFDKAQQSLKQNSI
PVSTAEASSIDIASDDQRSRVIVNLKDAGAFTTRVEGNTFVLKINSAKPAAINTPAATARQVQQGVSNIGFQRGNQGEGL
VVIDLLGNNTPVDVQQQGSKIVVRTAGNKIPTHLARRLNTNDFATPVASIDAYNDKGNGVITIQSAGSYEYMAYQAENKL
TISLKRPEDKSPTKAKTQAYTGNKISLDFQDIEVRRVLQLLADFTGINMVAADTVQGNITLRLKDVPWDQALDIVLKTKS
LDKRRNGNVIWIAPVSELIKSEEEEAKALAQSIKLAPLQTEYITLSYAKAVEIEKLITQGKNNNSNNSSGLSGNDTLAGG
LLSPRGTVSVDPRTNTLIVNDTSQKIDQIRKMVDLLDVSVKQVMIEARIVSASTDFTKEMGVKWGILSQGISNNNDLLVG
GSDTTLWNLRDPQKGDNGGWKYEIERPDNLNVDLGAVTPGASRIAFGLISLSDFMLDLELSAVQADGYGEVISTPKVMTA
DKQAAKIESGTKIPYASSTGGGASAVPKTEFIDATLSLDVTPSITPEGKVMMKLNITKDSPSNPTPTGQLTINKNSIDTN
VLVDNGETVVLGGIFEQENINSQTKVPFLGDIPYLGKLFRRERKTDNKRELLIFVTPRIVNDTLTRNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=696156 NDN13_RS12945 WP_251118231.1 2706616..2708742(-) (pilQ) [Acinetobacter sp. C32I]
ATGAATCATGCATTCCGTCAATTTTCTATGGGTGCTGTTGCGATTGCGGTGATGCAAGTGGCGTCAGCGCAAGTGAGTAT
GACTAATATTGTACCGATGAGTTTGGCCGATCAAGGCACGGAAATTCGTGTAATGTTTAATGGCCTTCCACCACAACCGC
AAGCTTATCAGTTAGAGCAACCGTCGCGTTTGATTTTAGATTTTGATAAAGCGCAACAAAGCTTAAAACAAAACTCGATT
CCAGTATCAACTGCTGAAGCGAGCTCGATCGACATTGCATCAGATGATCAACGTTCACGTGTAATAGTCAACCTAAAAGA
TGCAGGTGCGTTTACCACACGAGTTGAAGGTAATACATTTGTACTGAAAATTAACTCAGCCAAACCTGCTGCGATAAATA
CGCCTGCTGCCACAGCGCGTCAAGTACAGCAAGGCGTTTCCAATATTGGTTTCCAGCGAGGGAATCAAGGTGAAGGCTTG
GTTGTGATTGATTTGCTCGGGAATAACACACCCGTCGATGTACAACAACAAGGCAGTAAAATTGTAGTGCGTACGGCAGG
GAATAAAATTCCGACTCATTTAGCGCGTCGTTTAAATACCAATGATTTCGCAACTCCTGTTGCAAGTATTGATGCTTATA
ATGATAAAGGCAATGGCGTGATTACCATTCAATCTGCAGGTAGCTATGAATATATGGCCTATCAAGCAGAGAATAAACTC
ACTATTAGTCTAAAACGCCCTGAAGATAAATCACCAACAAAAGCCAAGACACAAGCTTATACGGGTAATAAGATTTCATT
AGATTTCCAAGATATTGAAGTACGCCGTGTATTACAGTTGCTGGCTGATTTTACTGGCATTAATATGGTCGCAGCGGATA
CGGTTCAGGGTAATATTACTTTGCGACTTAAAGATGTTCCTTGGGATCAAGCACTTGATATTGTGCTAAAAACCAAAAGT
CTAGATAAGCGTCGCAATGGTAATGTAATCTGGATTGCGCCTGTTTCAGAACTGATTAAGTCAGAGGAAGAGGAGGCTAA
GGCCTTAGCCCAGAGTATCAAGTTAGCTCCTCTACAAACGGAGTACATTACATTAAGCTATGCGAAAGCAGTTGAAATTG
AAAAACTAATCACCCAAGGAAAAAATAATAATAGTAACAATAGTTCAGGTTTAAGTGGAAATGATACATTGGCCGGAGGA
TTATTGAGTCCACGTGGAACTGTGTCAGTTGATCCACGGACGAATACTTTAATTGTAAATGATACTTCGCAGAAAATTGA
TCAGATTCGTAAGATGGTTGACTTACTTGATGTGTCAGTTAAACAGGTGATGATTGAGGCACGTATTGTCAGTGCTAGTA
CCGATTTCACTAAAGAAATGGGGGTAAAGTGGGGAATCTTGTCTCAAGGGATTAGCAATAATAATGATCTCTTAGTGGGG
GGGAGTGATACGACATTATGGAATTTACGAGATCCTCAAAAAGGTGATAATGGGGGTTGGAAATATGAAATTGAACGACC
AGATAATCTGAATGTGGATTTGGGGGCGGTAACACCAGGAGCGAGCCGTATAGCTTTTGGTTTGATCAGTCTTTCTGACT
TTATGCTTGACCTAGAGTTATCTGCAGTACAAGCAGATGGTTATGGTGAAGTTATTTCAACACCAAAAGTAATGACTGCT
GATAAGCAAGCTGCAAAAATTGAATCAGGAACAAAAATTCCATATGCATCTTCTACAGGTGGTGGTGCTAGTGCTGTTCC
TAAAACAGAATTTATCGATGCGACTTTAAGCTTGGATGTGACGCCAAGTATTACGCCTGAAGGTAAAGTCATGATGAAAC
TCAACATTACCAAAGATTCACCGAGTAACCCAACGCCAACAGGCCAGTTGACGATAAATAAAAATTCGATTGACACTAAT
GTGCTGGTGGATAATGGTGAAACAGTGGTTTTAGGTGGTATTTTTGAGCAAGAAAATATTAACTCACAAACTAAAGTACC
ATTCTTGGGTGATATTCCTTACTTAGGTAAATTATTCCGTAGAGAACGAAAAACTGATAATAAACGTGAACTGCTTATTT
TTGTGACACCGAGAATTGTTAATGACACTTTGACCAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Bacterial type II and III secretion system protein (Secretin)

(542-700)

AMIN domain (AMIN)

(37-120)

Secretin and TonB N terminus short domain (STN)

(292-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

75.275

100

0.774
  pilQ Acinetobacter baumannii strain A118

75.137

100

0.773
  comQ Acinetobacter baylyi ADP1

72.765

100

0.736
  pilQ Pseudomonas aeruginosa PAK

40.274

100

0.415
  pilQ Legionella pneumophila strain ERS1305867

37.553

99.294

0.373
  pilQ Legionella pneumophila strain Lp02

37.411

99.294

0.371