Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NDN13_RS12955 Genome accession   NZ_CP098480
Coordinates   2709334..2710077 (-) Length   247 a.a.
NCBI ID   WP_251115744.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2704334..2715077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS12935 (NDN13_12930) aroB 2704932..2706014 (-) 1083 WP_251115742.1 3-dehydroquinate synthase -
  NDN13_RS12940 (NDN13_12935) aroK 2706039..2706596 (-) 558 WP_004657425.1 shikimate kinase AroK -
  NDN13_RS12945 (NDN13_12940) pilQ 2706616..2708742 (-) 2127 WP_251118231.1 type IV pilus secretin PilQ family protein Machinery gene
  NDN13_RS12950 (NDN13_12945) pilP 2708804..2709331 (-) 528 WP_251115743.1 pilus assembly protein PilP Machinery gene
  NDN13_RS12955 (NDN13_12950) comO 2709334..2710077 (-) 744 WP_251115744.1 type 4a pilus biogenesis protein PilO Machinery gene
  NDN13_RS12960 (NDN13_12955) pilN 2710074..2710724 (-) 651 WP_251115745.1 PilN domain-containing protein Machinery gene
  NDN13_RS12965 (NDN13_12960) comM 2710724..2711782 (-) 1059 WP_004657415.1 pilus assembly protein PilM Machinery gene
  NDN13_RS12970 (NDN13_12965) ponA 2711946..2714552 (+) 2607 WP_251115746.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27692.36 Da        Isoelectric Point: 4.8483

>NTDB_id=696158 NDN13_RS12955 WP_251115744.1 2709334..2710077(-) (comO) [Acinetobacter sp. C32I]
MKLDKADDLNQDTVAVKKKKMTVDQFFQQFNTLDMNNYGSWPLSVKITCWIFVFLAVAALGYFVVIKSQLESIANAQAQE
QSLLNEFREKDSKLRNLQQYQAQLQEMEANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLESEVKQEFFIEQP
ISIDATGDYHAFGAFVTGIAALPRIVTLHDFTVEAKEDTQKKSDIPVVNYTVKAKTYRYVGTDEQINNAAGTPAAQAATT
PPAQGGK

Nucleotide


Download         Length: 744 bp        

>NTDB_id=696158 NDN13_RS12955 WP_251115744.1 2709334..2710077(-) (comO) [Acinetobacter sp. C32I]
ATGAAGTTAGATAAAGCTGATGATTTAAATCAAGACACCGTTGCTGTAAAGAAAAAGAAAATGACGGTGGATCAGTTCTT
CCAACAGTTCAACACGTTGGATATGAATAATTATGGCAGTTGGCCGTTGTCGGTCAAAATCACCTGCTGGATTTTCGTAT
TCTTGGCAGTTGCTGCATTAGGTTATTTTGTGGTGATTAAGTCACAACTTGAATCGATTGCAAATGCTCAAGCACAGGAA
CAAAGTTTGCTGAATGAGTTTAGAGAAAAAGACTCAAAATTAAGGAACTTGCAACAATATCAAGCGCAATTACAAGAAAT
GGAAGCGAACTTTAATCAGCAGTTAGAACAGTTGCCAAAAGAAACTGAAATTCCAAGTTTAGTTGAGGATATTAACTTAA
CCGGTGTGAACTCTGGACTGAAATTTAAAAATATCCGTCTAGAAAGTGAAGTGAAGCAAGAGTTCTTTATTGAGCAGCCG
ATTAGTATTGATGCGACAGGTGATTATCATGCTTTTGGTGCTTTTGTTACAGGGATTGCCGCTCTACCACGTATTGTAAC
TCTGCATGATTTCACGGTTGAAGCGAAAGAAGACACACAGAAAAAATCTGATATTCCTGTGGTGAACTATACCGTTAAAG
CAAAAACCTATCGTTATGTTGGAACGGATGAGCAAATAAATAATGCTGCAGGTACACCAGCCGCACAAGCAGCAACTACT
CCACCTGCGCAAGGAGGAAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

73.577

99.595

0.733
  pilO Acinetobacter baumannii D1279779

72.131

98.785

0.713