Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC851_RS11090 Genome accession   NZ_CP098464
Coordinates   2103896..2104264 (-) Length   122 a.a.
NCBI ID   WP_267736600.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2098896..2109264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC851_RS11065 (NC851_10985) msrAB 2099260..2100828 (-) 1569 WP_003694393.1 bifunctional peptide-methionine (S)-S-oxide reductase MsrA/peptide-methionine (R)-S-oxide reductase MsrB -
  NC851_RS11070 (NC851_10990) pilA 2100974..2102227 (+) 1254 WP_003687004.1 signal recognition particle-docking protein FtsY Machinery gene
  NC851_RS11075 (NC851_10995) - 2102305..2102478 (-) 174 WP_167550559.1 hypothetical protein -
  NC851_RS11080 (NC851_11000) - 2102492..2103336 (-) 845 Protein_2135 opacity family porin -
  NC851_RS12080 pilE 2103759..2103923 (-) 165 WP_003699316.1 hypothetical protein Machinery gene
  NC851_RS11090 (NC851_11005) pilE 2103896..2104264 (-) 369 WP_267736600.1 pilin Machinery gene
  NC851_RS11095 (NC851_11010) - 2104633..2104776 (-) 144 WP_012503975.1 hypothetical protein -
  NC851_RS11105 (NC851_11020) - 2105079..2105483 (-) 405 Protein_2139 pilin -
  NC851_RS11110 (NC851_11025) - 2106019..2106435 (-) 417 Protein_2140 pilin -
  NC851_RS11115 (NC851_11030) lpxC 2106535..2107458 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC851_RS11945 - 2107950..2108672 (-) 723 WP_374110874.1 pilin -
  NC851_RS11135 (NC851_11050) pilE 2108596..2108913 (-) 318 WP_003697861.1 pilin Machinery gene

Sequence

Protein


Download         Length: 122 a.a.        Molecular weight: 13089.16 Da        Isoelectric Point: 9.8475

>NTDB_id=695803 NC851_RS11090 WP_267736600.1 2103896..2104264(-) (pilE) [Neisseria gonorrhoeae strain 10269]
MNTLQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQVSEAILLAEGQKSAVTEYYLNNGEWPKDNGSAGVASSSSIK
GKYVKEVEVKNGVVTAQMKSDGVNKEIKGKRLSLWAGVKTVR

Nucleotide


Download         Length: 369 bp        

>NTDB_id=695803 NC851_RS11090 WP_267736600.1 2103896..2104264(-) (pilE) [Neisseria gonorrhoeae strain 10269]
ATGAATACCCTTCAAAAAGGCTTTACCCTTATCGAGCTGATGATTGTGATCGCCATCGTCGGCATTTTGGCGGCAGTCGC
CCTTCCCGCCTACCAAGACTACACCGCCCGCGCGCAAGTTTCCGAAGCCATCCTTTTGGCCGAAGGTCAAAAATCAGCCG
TTACCGAGTATTACCTGAATAACGGCGAATGGCCCAAAGACAACGGCTCTGCCGGCGTGGCATCTTCTTCATCAATCAAA
GGCAAATATGTTAAGGAAGTTGAAGTCAAAAACGGCGTCGTTACCGCCCAAATGAAATCAGACGGCGTAAACAAAGAAAT
CAAAGGCAAAAGACTCTCCCTGTGGGCAGGCGTGAAAACGGTTCGGTAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(36-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

87.931

95.082

0.836
  pilE Neisseria gonorrhoeae strain FA1090

87.931

95.082

0.836
  pilA Haemophilus influenzae 86-028NP

46.602

84.426

0.393
  comP Acinetobacter baylyi ADP1

52.874

71.311

0.377
  pilA2 Legionella pneumophila str. Paris

50

75.41

0.377
  pilA2 Legionella pneumophila strain ERS1305867

50

75.41

0.377
  pilA/pilA1 Eikenella corrodens VA1

51.724

71.311

0.369