Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NC851_RS11135 Genome accession   NZ_CP098464
Coordinates   2108596..2108913 (-) Length   105 a.a.
NCBI ID   WP_003697861.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10269     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2103596..2113913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC851_RS12080 pilE 2103759..2103923 (-) 165 WP_003699316.1 hypothetical protein Machinery gene
  NC851_RS11090 (NC851_11005) pilE 2103896..2104264 (-) 369 WP_267736600.1 pilin Machinery gene
  NC851_RS11095 (NC851_11010) - 2104633..2104776 (-) 144 WP_012503975.1 hypothetical protein -
  NC851_RS11105 (NC851_11020) - 2105079..2105483 (-) 405 Protein_2139 pilin -
  NC851_RS11110 (NC851_11025) - 2106019..2106435 (-) 417 Protein_2140 pilin -
  NC851_RS11115 (NC851_11030) lpxC 2106535..2107458 (-) 924 WP_003687007.1 UDP-3-O-acyl-N-acetylglucosamine deacetylase -
  NC851_RS11945 - 2107950..2108672 (-) 723 WP_374110874.1 pilin -
  NC851_RS11135 (NC851_11050) pilE 2108596..2108913 (-) 318 WP_003697861.1 pilin Machinery gene
  NC851_RS11140 (NC851_11055) - 2109286..2109417 (-) 132 WP_010356054.1 hypothetical protein -
  NC851_RS11145 (NC851_11060) - 2109499..2110187 (-) 689 Protein_2145 SprT family zinc-dependent metalloprotease -
  NC851_RS11150 (NC851_11065) - 2110184..2110927 (-) 744 WP_003687014.1 lysophospholipid acyltransferase family protein -
  NC851_RS11155 (NC851_11070) gmhB 2110957..2111520 (-) 564 WP_003687015.1 D-glycero-beta-D-manno-heptose 1,7-bisphosphate 7-phosphatase -
  NC851_RS11160 (NC851_11075) - 2111663..2113315 (+) 1653 WP_003699337.1 LTA synthase family protein -

Sequence

Protein


Download         Length: 105 a.a.        Molecular weight: 11639.16 Da        Isoelectric Point: 10.3830

>NTDB_id=695804 NC851_RS11135 WP_003697861.1 2108596..2108913(-) (pilE) [Neisseria gonorrhoeae strain 10269]
MASTGVNKEIKGKKLSLWAKRQDGSVKWFCGQPVKRESNNADAVTADGTDGANGTKIETKHLPSTCRDESSAGCIETPRA
DFKHFQKISRYRILPESRQMAGKQR

Nucleotide


Download         Length: 318 bp        

>NTDB_id=695804 NC851_RS11135 WP_003697861.1 2108596..2108913(-) (pilE) [Neisseria gonorrhoeae strain 10269]
ATGGCTTCAACCGGCGTAAACAAAGAAATCAAAGGCAAAAAACTCTCCCTGTGGGCCAAGCGTCAAGACGGTTCGGTAAA
ATGGTTCTGCGGACAGCCGGTTAAGCGCGAAAGCAACAACGCCGACGCCGTCACCGCCGACGGCACCGACGGCGCCAACG
GCACCAAAATCGAAACCAAGCACCTGCCGTCAACCTGCCGCGATGAATCATCTGCCGGTTGCATAGAAACACCACGCGCC
GATTTCAAACACTTCCAAAAAATCAGCCGTTACCGAATATTACCTGAATCACGGCAAATGGCCGGAAAACAACGGTGA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(2-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae strain FA1090

73.611

68.571

0.505
  pilE Neisseria gonorrhoeae MS11

60.563

67.619

0.41