Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   NCL52_RS09150 Genome accession   NZ_CP098417
Coordinates   1763470..1764720 (+) Length   416 a.a.
NCBI ID   WP_086343848.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1758470..1769720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS09120 (NCL52_09120) ymfH 1758560..1759846 (+) 1287 WP_086343846.1 pitrilysin family protein -
  NCL52_RS09125 (NCL52_09125) efpI 1759901..1760629 (+) 729 WP_086343847.1 EF-P-5 aminopentanone reductase -
  NCL52_RS09130 (NCL52_09130) ymfJ 1760710..1760967 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  NCL52_RS09135 (NCL52_09135) - 1761097..1761888 (+) 792 WP_003220998.1 YmfK family protein -
  NCL52_RS09140 (NCL52_09140) rodZ 1761955..1762821 (+) 867 WP_209271381.1 RodZ family helix-turn-helix domain-containing protein -
  NCL52_RS09145 (NCL52_09145) pgsA 1762871..1763452 (+) 582 WP_003244753.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  NCL52_RS09150 (NCL52_09150) cinA 1763470..1764720 (+) 1251 WP_086343848.1 competence/damage-inducible protein A Machinery gene
  NCL52_RS09155 (NCL52_09155) recA 1764893..1765939 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  NCL52_RS09160 (NCL52_09160) pbpX 1766107..1767282 (+) 1176 WP_042975804.1 serine hydrolase domain-containing protein -
  NCL52_RS09165 (NCL52_09165) rny 1767558..1769120 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45468.74 Da        Isoelectric Point: 5.2505

>NTDB_id=695376 NCL52_RS09150 WP_086343848.1 1763470..1764720(+) (cinA) [Bacillus subtilis strain N2-10]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVISIAEERSDFIIFSGGLGPTKDDL
TKETIANTLGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRYYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSIACKEKGITISAAESFTGGLFSEWLTDHSGASKLFAGGVVCYTNDVKQNVLG
VKKETLDRFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=695376 NCL52_RS09150 WP_086343848.1 1763470..1764720(+) (cinA) [Bacillus subtilis strain N2-10]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGTTGCTGCTTGGTCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCAGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGGCTTGGACCCACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATACGCTGGGACGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGCTCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGTATGCTCACAGAGCATGAATCACGCTATTATATGCTTCTTCCTGGACCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACTGTTCT
TCGCTTTTTCGGTATCGGTGAATCTCAGCTTGAAGCCGATTTGGAAGATATTATCGATGCACAAACCAATCCGACAATTG
CGCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGTTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGTTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTATAGCGTGCAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACCGGAGGGCTGTTTTCTGAATGGCTGA
CGGATCATAGCGGTGCCTCAAAATTATTTGCCGGGGGCGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTCAAGAAGGAAACATTAGATCGTTTTGGGGCGGTCAGCAAGGAGTGCGCATCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGCATTTCCGCAAATGGTAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGGATCAGAAAACGC
GGCGCTAAATACGGCTGCCATTTAATCTTAAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

99.76

100

0.998
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus mutans UA159

46.005

99.279

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375