Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NAF16_RS01715 Genome accession   NZ_CP098021
Coordinates   357849..359075 (-) Length   408 a.a.
NCBI ID   WP_158125405.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 352849..364075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS01690 (NAF16_01690) parC 352968..355241 (+) 2274 WP_047459105.1 DNA topoisomerase IV subunit A -
  NAF16_RS01695 (NAF16_01695) yacG 355292..355489 (-) 198 WP_020332195.1 DNA gyrase inhibitor YacG -
  NAF16_RS01700 (NAF16_01700) zapD 355544..356284 (-) 741 WP_020332196.1 cell division protein ZapD -
  NAF16_RS01705 (NAF16_01705) coaE 356317..356925 (-) 609 WP_158129989.1 dephospho-CoA kinase -
  NAF16_RS01710 (NAF16_01710) pilD 356928..357797 (-) 870 WP_047459100.1 A24 family peptidase Machinery gene
  NAF16_RS01715 (NAF16_01715) pilC 357849..359075 (-) 1227 WP_158125405.1 type II secretion system F family protein Machinery gene
  NAF16_RS01720 (NAF16_01720) pilB 359111..360799 (-) 1689 WP_158129991.1 type IV-A pilus assembly ATPase PilB Machinery gene
  NAF16_RS01725 (NAF16_01725) - 360813..361229 (-) 417 WP_158129992.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NAF16_RS01730 (NAF16_01730) nadC 361461..362348 (-) 888 WP_055452471.1 carboxylating nicotinate-nucleotide diphosphorylase -
  NAF16_RS01735 (NAF16_01735) ampD 362501..363052 (+) 552 WP_323694950.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  NAF16_RS01740 (NAF16_01740) fldB 363057..363578 (-) 522 WP_020430452.1 flavodoxin FldB -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44670.91 Da        Isoelectric Point: 10.5318

>NTDB_id=693541 NAF16_RS01715 WP_158125405.1 357849..359075(-) (pilC) [Vibrio fluvialis strain V13]
MKPTKGPELKNYRWKGVNSTGKKVAGQTLAISEIEVRDKLKEQHIQVKKIKKGSVSVLTRLTNRVKTKDITILTRQLATM
LTTGVPIVQALKLVGDNHRKAEMKSILAQITKGVEAGTPISKAMRTASTHFDALYVDLIQTGEQSGNLAEVFERLATYRE
KSEQLRAKVIKALIYPSMVILVALGVSYLMLTMVIPEFESMFKGFGAELPWFTQQILKLSHGVQAYSAGAFIASLSLVFG
IKAARKKSFVVRLKTSQLGLRFPIIGGVLAKAAIAKFSRTLATSFSAGIPILASLKTTAKTAGNVHFETAIQDVHRHTAA
GMPMYIAMRNTQAFPEMVLQMVMIGEESGKLDDMLNKVATIYEFEVDNTVDNLGKILEPLIIVFLGIVVGGLVVAMYLPI
FNLMSVLG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=693541 NAF16_RS01715 WP_158125405.1 357849..359075(-) (pilC) [Vibrio fluvialis strain V13]
ATGAAACCGACCAAAGGCCCTGAGTTAAAAAACTATCGCTGGAAAGGCGTCAACAGCACTGGCAAGAAAGTCGCGGGACA
GACACTGGCTATCAGTGAAATAGAAGTCCGCGACAAACTGAAAGAACAGCACATTCAGGTTAAGAAGATCAAAAAAGGCA
GCGTGTCAGTTCTGACTCGTCTCACCAATCGGGTCAAAACTAAAGACATCACCATCCTAACCCGCCAGCTTGCCACCATG
CTGACCACCGGAGTGCCGATTGTGCAGGCACTTAAATTGGTCGGCGATAATCATCGTAAAGCCGAGATGAAATCGATTCT
GGCGCAAATTACCAAAGGCGTCGAAGCCGGTACGCCGATTTCCAAAGCGATGCGTACTGCCAGCACTCACTTTGACGCGT
TGTACGTCGACTTAATTCAGACTGGCGAGCAGTCCGGCAATCTTGCCGAAGTCTTTGAACGCCTTGCCACCTATCGGGAA
AAAAGCGAACAACTGCGCGCGAAAGTAATCAAAGCGCTGATCTATCCCAGCATGGTCATTCTGGTGGCACTCGGCGTCTC
CTATTTGATGCTGACGATGGTCATTCCAGAGTTCGAAAGTATGTTCAAGGGTTTTGGAGCTGAACTGCCTTGGTTTACTC
AGCAGATCCTCAAGTTATCGCATGGGGTACAAGCCTACAGTGCGGGGGCGTTCATCGCGTCATTGAGCTTGGTGTTTGGC
ATCAAAGCGGCGCGGAAAAAATCCTTCGTCGTCCGTCTTAAAACCAGCCAGCTCGGCCTGCGTTTTCCCATCATTGGCGG
TGTGCTTGCCAAAGCCGCAATTGCCAAATTCAGCCGCACTCTGGCGACCAGCTTCAGTGCGGGAATTCCGATACTCGCCA
GCCTCAAGACCACCGCTAAAACGGCAGGTAACGTGCATTTTGAAACCGCCATTCAGGATGTTCACCGCCATACGGCAGCA
GGGATGCCGATGTATATTGCAATGCGCAACACACAAGCCTTTCCGGAAATGGTGTTGCAAATGGTGATGATCGGCGAGGA
GTCCGGCAAGCTCGACGACATGCTCAATAAAGTCGCCACCATCTATGAGTTTGAAGTCGACAACACCGTCGACAATCTGG
GCAAAATTCTTGAACCGCTGATTATTGTATTTTTGGGCATTGTAGTCGGTGGATTGGTGGTGGCGATGTACCTGCCAATC
TTTAACTTAATGAGTGTATTAGGTTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

87.255

100

0.873
  pilC Vibrio campbellii strain DS40M4

72.346

99.265

0.718
  pilC Acinetobacter baumannii D1279779

41.667

100

0.417
  pilC Legionella pneumophila strain ERS1305867

41.103

97.794

0.402
  pilC Acinetobacter baylyi ADP1

41.31

97.304

0.402
  pilC Pseudomonas stutzeri DSM 10701

39.899

97.059

0.387
  pilG Neisseria gonorrhoeae MS11

39.599

97.794

0.387
  pilG Neisseria meningitidis 44/76-A

39.098

97.794

0.382