Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NAG75_RS16625 Genome accession   NZ_CP097873
Coordinates   3336320..3337432 (-) Length   370 a.a.
NCBI ID   WP_208893517.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain GL-601     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3331320..3342432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS16595 hemF 3331781..3332698 (-) 918 WP_024699626.1 oxygen-dependent coproporphyrinogen oxidase -
  NAG75_RS16600 - 3332746..3333303 (-) 558 WP_005461456.1 L-threonylcarbamoyladenylate synthase -
  NAG75_RS16605 purE 3333503..3333988 (+) 486 WP_005497410.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  NAG75_RS16610 - 3333993..3335126 (+) 1134 WP_208893516.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  NAG75_RS16615 - 3335190..3335759 (-) 570 WP_005386647.1 type I DNA topoisomerase -
  NAG75_RS16620 - 3335838..3336317 (-) 480 WP_005461440.1 DUF494 family protein -
  NAG75_RS16625 dprA 3336320..3337432 (-) 1113 WP_208893517.1 DNA-processing protein DprA Machinery gene
  NAG75_RS16630 - 3337416..3338510 (-) 1095 WP_005461388.1 LysM peptidoglycan-binding domain-containing protein -
  NAG75_RS16635 def 3338649..3339167 (+) 519 WP_005461416.1 peptide deformylase -
  NAG75_RS16640 fmt 3339201..3340148 (+) 948 WP_208893518.1 methionyl-tRNA formyltransferase -
  NAG75_RS16645 rsmB 3340229..3341512 (+) 1284 WP_005394040.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39889.52 Da        Isoelectric Point: 6.4129

>NTDB_id=693219 NAG75_RS16625 WP_208893517.1 3336320..3337432(-) (dprA) [Vibrio parahaemolyticus strain GL-601]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELIVTSGLALGIDGHA
HDGALQAGGKTIAVLGSGLEHVYPARHRGLAQRVTENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFSQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=693219 NAG75_RS16625 WP_208893517.1 3336320..3337432(-) (dprA) [Vibrio parahaemolyticus strain GL-601]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTACCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATAGCCATGGTGGGTAGCCGTAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAGCAAGAATTGATTGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGCGGGTGGTAAGACGATAGCTGTGCTCGGGTCTGGTTTAGAACATGTTTATCCTGCTCGTCA
TCGTGGTTTAGCGCAGCGAGTAACAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAGAGTATTGATTTATTTTCTACGCTAAATGATGAAGAAGAATTGCCATTTTCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.324

100

0.843
  dprA Vibrio cholerae strain A1552

58.919

100

0.589
  dprA Glaesserella parasuis strain SC1401

47.185

100

0.476
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis MC58

37.436

100

0.395
  dprA Neisseria meningitidis strain C311

37.436

100

0.395
  dprA Haemophilus influenzae Rd KW20

51.254

75.405

0.386
  dprA Neisseria gonorrhoeae MS11

35.309

100

0.37
  dprA Neisseria gonorrhoeae strain FA1090

35.052

100

0.368