Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M8C01_RS17360 Genome accession   NZ_CP097858
Coordinates   3750190..3751299 (-) Length   369 a.a.
NCBI ID   WP_264403997.1    Uniprot ID   -
Organism   Vibrio owensii strain GL-605     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3745190..3756299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS17330 hemF 3745718..3746635 (-) 918 WP_264403994.1 oxygen-dependent coproporphyrinogen oxidase -
  M8C01_RS17335 - 3746670..3747227 (-) 558 WP_020196744.1 L-threonylcarbamoyladenylate synthase -
  M8C01_RS17340 purE 3747428..3747913 (+) 486 WP_005440742.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M8C01_RS17345 - 3747918..3749051 (+) 1134 WP_264403995.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M8C01_RS17350 - 3749116..3749685 (-) 570 WP_264403996.1 type I DNA topoisomerase -
  M8C01_RS17355 - 3749708..3750187 (-) 480 WP_005429833.1 DUF494 family protein -
  M8C01_RS17360 dprA 3750190..3751299 (-) 1110 WP_264403997.1 DNA-processing protein DprA Machinery gene
  M8C01_RS17365 - 3751283..3752377 (-) 1095 WP_264403998.1 LysM peptidoglycan-binding domain-containing protein -
  M8C01_RS17370 def 3752516..3753034 (+) 519 WP_033006323.1 peptide deformylase -
  M8C01_RS17375 fmt 3753068..3754015 (+) 948 WP_038896195.1 methionyl-tRNA formyltransferase -
  M8C01_RS17380 rsmB 3754098..3755381 (+) 1284 WP_005440762.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39412.21 Da        Isoelectric Point: 6.4977

>NTDB_id=693131 M8C01_RS17360 WP_264403997.1 3750190..3751299(-) (dprA) [Vibrio owensii strain GL-605]
MKPHNDTNLAAWLKLSCLPGIGGVKLSKLLIKDTPSNIVQYSTEQLQLLGLTAKQLQAWSQVDKEVDACLTWAAASSHHH
ILTLADALYPPLLKQTVAPPPLLFVKGDASCLSQPQIAMVGSRNASVDGLQHARGFASELVQHDLIVTSGLALGIDGHAH
DGALLAGGKTIAVLGSGLEQVYPARHRGLAKRVMENGALVSEFRPDAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGSL
ITARYALEQGREVFALPASINAPNASGGNQLIRNGACLVQNTQEVLNEIQSLLDWSINQSLDLFSAPIDEEELPFPQLLA
NVGNEATPVDILASRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=693131 M8C01_RS17360 WP_264403997.1 3750190..3751299(-) (dprA) [Vibrio owensii strain GL-605]
ATGAAACCACACAATGATACGAATCTCGCCGCCTGGCTAAAGTTGAGTTGTTTGCCAGGCATTGGCGGGGTCAAGCTGAG
TAAGCTGCTGATCAAAGACACGCCGAGTAATATTGTCCAATATTCCACGGAGCAGCTTCAGCTTTTAGGCTTAACGGCAA
AACAACTGCAAGCGTGGTCGCAGGTCGATAAAGAAGTCGATGCTTGTCTGACTTGGGCTGCTGCATCTTCTCATCATCAT
ATTCTTACTTTGGCGGATGCTTTGTATCCGCCACTTCTCAAACAAACCGTCGCACCGCCTCCTTTATTATTCGTAAAGGG
AGACGCGAGCTGCTTGTCTCAGCCACAAATTGCCATGGTTGGCAGTCGTAATGCCAGCGTGGACGGACTACAACATGCAA
GAGGCTTTGCATCAGAATTGGTACAGCATGATCTGATCGTCACCAGTGGTTTAGCATTGGGTATTGATGGTCATGCTCAT
GATGGCGCGCTTTTAGCTGGAGGTAAAACCATCGCAGTGCTTGGTTCTGGGTTGGAACAAGTGTACCCAGCAAGACACCG
AGGTTTAGCGAAACGAGTGATGGAAAATGGTGCGCTTGTTTCTGAGTTTCGTCCAGATGCTAAGCCTCGTGCAGAAAACT
TCCCTCGTCGTAATCGAATTATTAGTGGTTTGTCGCTGGGTGTTTTGGTAGTGGAAGCGGCTGAAAAAAGTGGTTCCTTA
ATCACTGCACGCTATGCTCTTGAGCAAGGTCGAGAAGTTTTCGCTCTGCCAGCTTCGATTAATGCTCCTAACGCCAGTGG
TGGTAATCAATTGATTCGTAACGGAGCTTGCCTCGTACAAAATACTCAAGAGGTGCTGAATGAAATACAGTCTTTACTCG
ACTGGTCTATTAATCAGAGCTTAGATTTATTTTCTGCGCCAATTGATGAAGAAGAATTGCCATTTCCTCAGCTGTTAGCT
AACGTAGGAAATGAGGCTACACCAGTTGATATTCTTGCAAGCAGGACCAATATACCTGTCCAAGAAGTCATGATGCAGCT
CTTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTATCCGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(307-362)

DNA recombination-mediator protein A (DNA_processg_A)

(77-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

95.664

100

0.957
  dprA Vibrio cholerae strain A1552

58.919

100

0.591
  dprA Glaesserella parasuis strain SC1401

47.733

100

0.485
  dprA Legionella pneumophila strain ERS1305867

45

97.561

0.439
  dprA Haemophilus influenzae Rd KW20

44.706

92.141

0.412
  dprA Neisseria meningitidis strain C311

36.504

100

0.385
  dprA Neisseria meningitidis MC58

36.504

100

0.385
  dprA Neisseria gonorrhoeae MS11

35.917

100

0.377
  dprA Neisseria gonorrhoeae strain FA1090

35.659

100

0.374