NTDB

Overview

Name	pilA	Type	Machinery gene
Locus tag	M9410_RS02500	Genome accession	NZ_CP097799
Coordinates	534638..535072 (+)	Length	144 a.a.
NCBI ID	WP_005741096.1	Uniprot ID	-
Organism	Pasteurella multocida strain 39639
Function	type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 529638..540072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M9410_RS02470 (M9410_02470)	tadA	529748..530248 (-)	501	WP_005755875.1	tRNA adenosine(34) deaminase TadA	-
M9410_RS02475 (M9410_02475)	-	530263..531114 (-)	852	WP_005751072.1	thymidylate synthase	-
M9410_RS02480 (M9410_02480)	lgt	531120..531923 (-)	804	WP_005755876.1	prolipoprotein diacylglyceryl transferase	-
M9410_RS02485 (M9410_02485)	-	531933..532727 (-)	795	WP_005722415.1	sulfite exporter TauE/SafE family protein	-
M9410_RS02490 (M9410_02490)	rppH	532730..533326 (-)	597	WP_005722417.1	RNA pyrophosphohydrolase	-
M9410_RS02495 (M9410_02495)	ampD	533912..534478 (-)	567	WP_005719130.1	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	-
M9410_RS02500 (M9410_02500)	pilA	534638..535072 (+)	435	WP_005741096.1	prepilin peptidase-dependent pilin	Machinery gene
M9410_RS02505 (M9410_02505)	pilB	535072..536457 (+)	1386	WP_005755879.1	GspE/PulE family protein	Machinery gene
M9410_RS02510 (M9410_02510)	pilC	536457..537668 (+)	1212	WP_005755881.1	type II secretion system F family protein	Machinery gene
M9410_RS02515 (M9410_02515)	-	537668..538390 (+)	723	WP_005755882.1	A24 family peptidase	-
M9410_RS02520 (M9410_02520)	coaE	538405..539025 (+)	621	WP_005751078.1	dephospho-CoA kinase	-
M9410_RS02525 (M9410_02525)	yacG	539036..539239 (+)	204	WP_005755884.1	DNA gyrase inhibitor YacG	-
M9410_RS02530 (M9410_02530)	-	539239..539508 (+)	270	WP_005755886.1	GNAT family N-acetyltransferase	-

Sequence

Protein

Download Length: 144 a.a. Molecular weight: 15058.48 Da Isoelectric Point: 9.1281

                                >NTDB_id=692682 M9410_RS02500 WP_005741096.1 534638..535072(+) (pilA) [Pasteurella multocida strain 39639]

MKKAIFFSIKKGFTLIELMIVIAIIAILATIAVPSYQNYTKKAAISELLQAAAPYRAEVELCIYNTNSTTNCNAGSHGIR

ADAAASKKYLKAITVKAGVITVTGQGSLEGISYTLTASGNAAQGVSWTVNCGAQSDIFPAGFCA

Nucleotide

Download Length: 435 bp

                                >NTDB_id=692682 M9410_RS02500 WP_005741096.1 534638..535072(+) (pilA) [Pasteurella multocida strain 39639]

ATGAAAAAAGCCATTTTCTTTTCGATTAAAAAAGGGTTTACGCTAATTGAATTAATGATTGTCATTGCCATTATTGCGAT

TTTAGCCACGATTGCCGTGCCATCTTATCAAAATTATACAAAAAAAGCGGCAATCTCTGAATTATTGCAAGCCGCAGCTC

CTTATCGTGCTGAGGTAGAGCTTTGTATCTATAATACAAATAGTACAACGAATTGTAATGCAGGAAGTCATGGTATTCGT

GCTGATGCTGCAGCAAGTAAAAAATATTTAAAAGCCATCACGGTTAAAGCTGGGGTAATTACTGTCACTGGACAAGGGAG

CTTGGAAGGAATTAGCTATACGCTGACAGCGAGTGGTAACGCAGCTCAAGGTGTTTCTTGGACAGTTAATTGTGGTGCTC

AATCTGACATTTTCCCAGCAGGATTTTGTGCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(42-141)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilA	Haemophilus influenzae 86-028NP	63.194	100	0.632
pilA	Haemophilus influenzae Rd KW20	61.111	100	0.611
pilA	Glaesserella parasuis strain SC1401	52.349	100	0.542
pilA	Vibrio cholerae O1 biovar El Tor strain E7946	36.806	100	0.368
pilA	Vibrio cholerae strain A1552	36.806	100	0.368
pilA	Vibrio cholerae C6706	36.806	100	0.368

Detailed information NTG0692682