Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M9410_RS02510 Genome accession   NZ_CP097799
Coordinates   536457..537668 (+) Length   403 a.a.
NCBI ID   WP_005755881.1    Uniprot ID   -
Organism   Pasteurella multocida strain 39639     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 531457..542668
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9410_RS02485 (M9410_02485) - 531933..532727 (-) 795 WP_005722415.1 sulfite exporter TauE/SafE family protein -
  M9410_RS02490 (M9410_02490) rppH 532730..533326 (-) 597 WP_005722417.1 RNA pyrophosphohydrolase -
  M9410_RS02495 (M9410_02495) ampD 533912..534478 (-) 567 WP_005719130.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  M9410_RS02500 (M9410_02500) pilA 534638..535072 (+) 435 WP_005741096.1 prepilin peptidase-dependent pilin Machinery gene
  M9410_RS02505 (M9410_02505) pilB 535072..536457 (+) 1386 WP_005755879.1 GspE/PulE family protein Machinery gene
  M9410_RS02510 (M9410_02510) pilC 536457..537668 (+) 1212 WP_005755881.1 type II secretion system F family protein Machinery gene
  M9410_RS02515 (M9410_02515) - 537668..538390 (+) 723 WP_005755882.1 A24 family peptidase -
  M9410_RS02520 (M9410_02520) coaE 538405..539025 (+) 621 WP_005751078.1 dephospho-CoA kinase -
  M9410_RS02525 (M9410_02525) yacG 539036..539239 (+) 204 WP_005755884.1 DNA gyrase inhibitor YacG -
  M9410_RS02530 (M9410_02530) - 539239..539508 (+) 270 WP_005755886.1 GNAT family N-acetyltransferase -
  M9410_RS02535 (M9410_02535) - 539957..541330 (+) 1374 WP_005722571.1 sodium:alanine symporter family protein -
  M9410_RS02540 (M9410_02540) raiA 541575..541892 (+) 318 WP_005722573.1 ribosome-associated translation inhibitor RaiA -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 46109.06 Da        Isoelectric Point: 9.8732

>NTDB_id=692684 M9410_RS02510 WP_005755881.1 536457..537668(+) (pilC) [Pasteurella multocida strain 39639]
MKKLKMFRWKGINRLQQIQKGVIVAESKEIAQQSLLLQGVHQLHLQRNWQLSMQPKYTEICDLLMQLAMLLQASVPLKES
LQLLQRHASNIELTQWLRQLLCSLESGFSFSTALATQDRYLTKQEYQLISVGESTGKLQLVCAQLAKQRQQSLGLRRKVQ
KMLFYPMLVLAVTLILTLLLLLFIVPQFAEIYANQPLPAFTVLLLNVSAGLRGYAFQLSLLLIFGFIFLLLNARQRVGLY
RLKNCLLHFLPIFKKIAQHHELIHFCRHLHLMLSSGMPLQQALQTFLPTQKSGIAKHELTEMRLAEEVQLMLKGIAQGYR
FSEVIGSNLFPEMAQQMLHVGEQTGRLSEMLQYIAESYQQKLEHQLDLLSQLLEPCLMLVIGSIIGVILLGMYLPMFNMG
ALV

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=692684 M9410_RS02510 WP_005755881.1 536457..537668(+) (pilC) [Pasteurella multocida strain 39639]
ATGAAAAAATTAAAAATGTTTCGTTGGAAAGGAATAAATCGATTACAGCAAATACAAAAAGGAGTTATTGTGGCGGAAAG
TAAAGAGATAGCACAGCAATCTTTATTACTTCAGGGCGTTCACCAACTGCATTTACAACGAAATTGGCAGCTTTCTATGC
AACCTAAATATACCGAGATTTGTGATCTGTTAATGCAATTAGCGATGCTATTACAAGCATCGGTTCCCTTGAAGGAAAGT
TTACAGCTATTACAGCGACATGCTAGCAATATTGAGTTAACGCAATGGTTACGTCAGTTACTCTGTTCACTCGAAAGTGG
ATTTTCTTTTTCAACCGCGCTAGCTACACAAGATCGTTACTTAACAAAACAGGAATACCAATTAATTTCTGTTGGTGAAT
CGACAGGGAAACTACAGCTTGTTTGTGCACAATTAGCGAAACAACGTCAACAATCACTGGGGTTACGACGCAAAGTTCAG
AAAATGTTGTTTTATCCAATGTTAGTGCTTGCTGTGACATTGATCTTAACATTGTTGTTACTGCTATTTATTGTGCCACA
GTTTGCTGAGATTTATGCAAATCAACCTTTACCTGCGTTTACTGTGTTGTTATTGAATGTATCGGCAGGGTTACGTGGTT
ATGCTTTTCAATTGAGTCTCCTATTAATTTTCGGCTTCATTTTTTTGCTGTTAAATGCGAGACAGCGAGTTGGACTATAT
CGATTAAAAAATTGTCTGCTTCATTTCCTTCCAATCTTTAAGAAAATTGCGCAACATCACGAGCTTATTCATTTTTGTCG
TCATTTACATCTTATGCTCAGCTCGGGCATGCCTTTGCAACAGGCATTGCAGACTTTTTTACCTACACAGAAAAGTGGTA
TAGCAAAACACGAGCTTACCGAGATGCGACTGGCTGAAGAAGTACAGTTAATGTTAAAGGGGATTGCTCAAGGTTATAGG
TTTTCTGAGGTTATCGGCTCTAACTTATTTCCGGAGATGGCACAACAGATGTTACATGTTGGTGAACAGACAGGGCGATT
AAGCGAAATGTTGCAGTATATAGCAGAAAGTTATCAACAAAAGTTAGAGCACCAACTTGATTTACTTTCACAATTATTGG
AACCCTGTTTAATGTTAGTGATTGGTTCGATTATTGGTGTCATTTTATTGGGTATGTATTTACCGATGTTTAATATGGGG
GCATTGGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(265-395)

Type II secretion system (T2SS), protein F (T2SSF)

(64-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Haemophilus influenzae Rd KW20

48.148

100

0.484
  pilC Haemophilus influenzae 86-028NP

47.901

100

0.481
  pilC Glaesserella parasuis strain SC1401

39.259

100

0.395