Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MF622_RS10420 Genome accession   NZ_CP097778
Coordinates   2222970..2224238 (+) Length   422 a.a.
NCBI ID   WP_250244782.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain K 1.14     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2217970..2229238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF622_RS10390 (MF622_002072) - 2218778..2219032 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  MF622_RS10395 (MF622_002073) - 2219260..2220033 (+) 774 WP_250244779.1 DUF3388 domain-containing protein -
  MF622_RS10400 (MF622_002074) - 2220064..2221191 (+) 1128 WP_250244780.1 RodZ domain-containing protein -
  MF622_RS10405 (MF622_002075) - 2221276..2221440 (+) 165 WP_023988236.1 hypothetical protein -
  MF622_RS10410 (MF622_002076) - 2221585..2222076 (+) 492 WP_013309953.1 YajQ family cyclic di-GMP-binding protein -
  MF622_RS10415 (MF622_002077) pgsA 2222287..2222874 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MF622_RS10420 (MF622_002078) cinA 2222970..2224238 (+) 1269 WP_250244782.1 competence/damage-inducible protein A Machinery gene
  MF622_RS10425 (MF622_002079) recA 2224481..2225542 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  MF622_RS10430 (MF622_002080) - 2225739..2226488 (+) 750 WP_250244784.1 RecX family transcriptional regulator -
  MF622_RS10435 (MF622_002081) rny 2226863..2228407 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46485.51 Da        Isoelectric Point: 4.9003

>NTDB_id=692229 MF622_RS10420 WP_250244782.1 2222970..2224238(+) (cinA) [Paenibacillus polymyxa strain K 1.14]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNINRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQEGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVTLEKVIVDLMAKRELTVSAAESCTGGMLMEHITSIPGSAVMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=692229 MF622_RS10420 WP_250244782.1 2222970..2224238(+) (cinA) [Paenibacillus polymyxa strain K 1.14]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTGCTCGGACAAATTGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATCGGAATCGATGTATATTTCCAGACTGTGGTTGGCGATAACATAAATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCGCTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGAGGGTAAATTTTATGTAGTTTTACCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCATGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGCGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGAATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCTCAGACAGATCCCACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTACGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACACATCACTTCTA
TACCTGGCAGTGCTGTTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAATTACTCAACGTGCCT
TATGATTATTTGGAAGGGGATCATGCGCCAGGTGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGACAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(260-414)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.512

97.156

0.481
  cinA Streptococcus pneumoniae TIGR4

49.268

97.156

0.479
  cinA Streptococcus mitis NCTC 12261

49.024

97.156

0.476
  cinA Streptococcus pneumoniae Rx1

49.024

97.156

0.476
  cinA Streptococcus pneumoniae R6

49.024

97.156

0.476
  cinA Streptococcus pneumoniae D39

48.78

97.156

0.474
  cinA Bacillus subtilis subsp. subtilis str. 168

49.01

95.735

0.469
  cinA Streptococcus mutans UA159

45.176

100

0.455
  cinA Streptococcus suis isolate S10

44.819

91.469

0.41