Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   N6H00_RS14155 Genome accession   NZ_CP114036
Coordinates   3246146..3246748 (-) Length   200 a.a.
NCBI ID   WP_268976961.1    Uniprot ID   A0ABY9VFR8
Organism   Streptomyces sp. S465     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3241146..3251748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS14135 (N6H00_14135) - 3241950..3242966 (+) 1017 WP_268972021.1 hypothetical protein -
  N6H00_RS14140 (N6H00_14140) - 3243023..3243871 (+) 849 WP_268972022.1 hypothetical protein -
  N6H00_RS14145 (N6H00_14145) clpX 3243959..3245245 (-) 1287 WP_069865840.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  N6H00_RS14150 (N6H00_14150) clpP 3245428..3246084 (-) 657 WP_268972023.1 ATP-dependent Clp protease proteolytic subunit Regulator
  N6H00_RS14155 (N6H00_14155) clpP 3246146..3246748 (-) 603 WP_268976961.1 ATP-dependent Clp protease proteolytic subunit Regulator
  N6H00_RS14160 (N6H00_14160) tig 3247037..3248473 (-) 1437 WP_268972024.1 trigger factor -
  N6H00_RS14175 (N6H00_14175) - 3249097..3249291 (-) 195 WP_268972025.1 hypothetical protein -
  N6H00_RS14180 (N6H00_14180) - 3249907..3251097 (+) 1191 WP_268972026.1 acyltransferase family protein -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 21178.04 Da        Isoelectric Point: 4.6831

>NTDB_id=692134 N6H00_RS14155 WP_268976961.1 3246146..3246748(-) (clpP) [Streptomyces sp. S465]
MPSAAGEPTVGGLGDQVYNRLLGERIIFLGQPVDDDIANKITAQLLLLAADPDKDIYLYINSPGGSISAGMAIYDTMQYI
KNDVVTIAMGLAASMGQFLLSAGTPGKRFALPNAEILIHQPSAGLAGSASDIKIHAERLLHTKKRMAELTAFHTGQTVEQ
IVRDSDRDRWFSAEEAKEYGLIDDVMTTASSVPGGGGTGA

Nucleotide


Download         Length: 603 bp        

>NTDB_id=692134 N6H00_RS14155 WP_268976961.1 3246146..3246748(-) (clpP) [Streptomyces sp. S465]
ATGCCTTCCGCCGCCGGCGAGCCGACCGTCGGTGGCCTCGGCGACCAGGTCTACAACCGGCTGCTCGGCGAGCGGATCAT
CTTCCTCGGCCAGCCGGTCGACGACGACATCGCCAACAAGATCACGGCACAGCTACTCCTGCTCGCCGCCGATCCGGACA
AGGACATCTACCTCTACATCAACTCCCCGGGCGGTTCGATCTCGGCCGGCATGGCGATCTACGACACCATGCAGTACATC
AAGAACGACGTGGTCACCATCGCCATGGGCCTCGCCGCCTCGATGGGCCAGTTCCTGCTGAGCGCCGGCACCCCGGGCAA
GCGCTTCGCGCTCCCCAATGCCGAGATCCTGATCCACCAGCCCTCCGCGGGCCTGGCGGGTTCCGCCTCGGACATCAAGA
TCCACGCCGAGCGGCTGCTGCACACCAAGAAGCGCATGGCCGAGCTCACCGCCTTCCACACCGGCCAGACGGTTGAGCAG
ATCGTCCGTGACTCCGACCGCGACCGCTGGTTCTCCGCCGAGGAGGCCAAGGAGTACGGCCTGATCGACGACGTCATGAC
GACCGCCTCCAGCGTTCCGGGCGGTGGCGGCACTGGGGCCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(15-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

55.851

94

0.525
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

53.476

93.5

0.5
  clpP Lactococcus lactis subsp. cremoris KW2

51.813

96.5

0.5
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

51.295

96.5

0.495
  clpP Streptococcus mutans UA159

51.852

94.5

0.49
  clpP Streptococcus pyogenes JRS4

51.323

94.5

0.485
  clpP Streptococcus pyogenes MGAS315

51.323

94.5

0.485
  clpP Streptococcus thermophilus LMD-9

50.262

95.5

0.48
  clpP Streptococcus thermophilus LMG 18311

50.262

95.5

0.48
  clpP Streptococcus pneumoniae Rx1

49.223

96.5

0.475
  clpP Streptococcus pneumoniae D39

49.223

96.5

0.475
  clpP Streptococcus pneumoniae R6

49.223

96.5

0.475
  clpP Streptococcus pneumoniae TIGR4

49.223

96.5

0.475