Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   N6H00_RS14150 Genome accession   NZ_CP114036
Coordinates   3245428..3246084 (-) Length   218 a.a.
NCBI ID   WP_268972023.1    Uniprot ID   A0ABY9UVH5
Organism   Streptomyces sp. S465     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 3240428..3251084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  N6H00_RS14130 (N6H00_14130) - 3240892..3241884 (+) 993 WP_268972020.1 hypothetical protein -
  N6H00_RS14135 (N6H00_14135) - 3241950..3242966 (+) 1017 WP_268972021.1 hypothetical protein -
  N6H00_RS14140 (N6H00_14140) - 3243023..3243871 (+) 849 WP_268972022.1 hypothetical protein -
  N6H00_RS14145 (N6H00_14145) clpX 3243959..3245245 (-) 1287 WP_069865840.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  N6H00_RS14150 (N6H00_14150) clpP 3245428..3246084 (-) 657 WP_268972023.1 ATP-dependent Clp protease proteolytic subunit Regulator
  N6H00_RS14155 (N6H00_14155) clpP 3246146..3246748 (-) 603 WP_268976961.1 ATP-dependent Clp protease proteolytic subunit Regulator
  N6H00_RS14160 (N6H00_14160) tig 3247037..3248473 (-) 1437 WP_268972024.1 trigger factor -
  N6H00_RS14175 (N6H00_14175) - 3249097..3249291 (-) 195 WP_268972025.1 hypothetical protein -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23897.24 Da        Isoelectric Point: 4.5997

>NTDB_id=692133 N6H00_RS14150 WP_268972023.1 3245428..3246084(-) (clpP) [Streptomyces sp. S465]
MSNFPGSGLYTGPMAESRYVVPRFVERTSQGIREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISVY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPYSETGRGQVSDLEIAANE
ILRMRSQLEEMLAKHSTTPIEKIRDDIERDKILTAEESLAYGLVDQIVSTRKTSVGLG

Nucleotide


Download         Length: 657 bp        

>NTDB_id=692133 N6H00_RS14150 WP_268972023.1 3245428..3246084(-) (clpP) [Streptomyces sp. S465]
ATGAGCAACTTCCCCGGCAGCGGCCTGTACACCGGCCCGATGGCCGAATCCCGCTATGTCGTTCCGCGCTTCGTCGAGCG
CACCTCCCAGGGCATTCGCGAGTACGACCCGTACGCCAAGCTCTTCGAAGAGCGCGTGATCTTCCTGGGCGTCCAGATCG
ACGACGCCTCGGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGCGACATCTCGGTCTAC
ATCAACTCGCCCGGCGGCTCGTTCACCGCGCTGACCGCCATCTACGACACGATGCAGTTCGTCAAGCCCGACATCCAGAC
GGTCTGCATGGGCCAGGCGGCGTCCGCCGCGGCCGTGCTGCTCGCCGCCGGTACGCCGGGCAAGCGGATGGCCCTGCCCA
ACGCCCGGGTGCTGATCCACCAGCCGTACAGTGAGACCGGGCGGGGTCAGGTCTCCGACCTGGAGATCGCGGCCAACGAG
ATCCTGCGCATGCGCTCGCAGCTCGAGGAGATGCTGGCCAAGCACTCCACCACGCCCATCGAGAAGATCCGCGACGATAT
CGAGCGGGACAAGATCCTCACGGCCGAGGAGTCCCTGGCGTACGGTCTTGTCGACCAGATCGTCTCGACCCGCAAGACGT
CGGTCGGTCTCGGCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

51.053

87.156

0.445
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.404

86.239

0.417
  clpP Streptococcus thermophilus LMD-9

45.361

88.991

0.404
  clpP Streptococcus pyogenes JRS4

45.361

88.991

0.404
  clpP Streptococcus pyogenes MGAS315

45.361

88.991

0.404
  clpP Streptococcus thermophilus LMG 18311

45.361

88.991

0.404
  clpP Streptococcus mutans UA159

44

91.743

0.404
  clpP Lactococcus lactis subsp. cremoris KW2

45.55

87.615

0.399
  clpP Streptococcus pneumoniae R6

44.56

88.532

0.394
  clpP Streptococcus pneumoniae TIGR4

44.56

88.532

0.394
  clpP Streptococcus pneumoniae D39

44.56

88.532

0.394
  clpP Streptococcus pneumoniae Rx1

44.56

88.532

0.394
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.503

87.615

0.39