Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MF627_RS05375 Genome accession   NZ_CP097769
Coordinates   1111541..1112809 (+) Length   422 a.a.
NCBI ID   WP_250261587.1    Uniprot ID   -
Organism   Paenibacillus polymyxa strain R 4.24     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1106541..1117809
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF627_RS05345 (MF627_001062) - 1107400..1107654 (+) 255 WP_013309950.1 DUF3243 domain-containing protein -
  MF627_RS05350 (MF627_001063) - 1107882..1108655 (+) 774 WP_013370747.1 DUF3388 domain-containing protein -
  MF627_RS05355 (MF627_001064) - 1108686..1109762 (+) 1077 WP_250268118.1 helix-turn-helix domain-containing protein -
  MF627_RS05360 (MF627_001065) - 1109847..1110011 (+) 165 WP_023988236.1 hypothetical protein -
  MF627_RS05365 (MF627_001066) - 1110156..1110647 (+) 492 WP_023988237.1 YajQ family cyclic di-GMP-binding protein -
  MF627_RS05370 (MF627_001067) pgsA 1110858..1111445 (+) 588 WP_013309954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MF627_RS05375 (MF627_001068) cinA 1111541..1112809 (+) 1269 WP_250261587.1 competence/damage-inducible protein A Machinery gene
  MF627_RS05380 (MF627_001069) recA 1113052..1114113 (+) 1062 WP_023988239.1 recombinase RecA Machinery gene
  MF627_RS05385 (MF627_001070) - 1114309..1115058 (+) 750 WP_250268119.1 regulatory protein RecX -
  MF627_RS05390 (MF627_001071) rny 1115433..1116977 (+) 1545 WP_013309958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46405.38 Da        Isoelectric Point: 4.7819

>NTDB_id=692126 MF627_RS05375 WP_250261587.1 1111541..1112809(+) (cinA) [Paenibacillus polymyxa strain R 4.24]
MKAEIIAVGTELLLGQIVNTNAQYLSQELATIGIDVYFQTVVGDNIDRLQEAIRIAQKRADIILFSGGLGPTQDDLTKEA
IAAVLGRKLHIDRLAMDKLDQFFRNRGVEMTENNRRQALSIEGATPLENETGLAVGDAIAQDGKFYVVLPGPPKELKPMF
ANHAKPWLLQQALSGEEMPIYSKMLKFAGIGESALETHLLDLIQSQTDPTIAPYAKEGEVTIRISTKAASESEALIKLTA
TEVEIQQRLSEYMYASEDVALEKVIVDLMAKRELTVSAAESCTGGMLMEQITSIPGSAAMFQGGIVCYSNEMKMKLLNVP
YDYLEGDHAPGAVSKEVALVLAEQARMIMDSDFGLSVTGVAGPGYSERKPVGLVYIGIAERDKETEVHELRLSGNRETIR
LRSVKAILYRLWRRLVENEKLS

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=692126 MF627_RS05375 WP_250261587.1 1111541..1112809(+) (cinA) [Paenibacillus polymyxa strain R 4.24]
ATGAAAGCTGAAATAATTGCAGTAGGAACAGAGTTATTACTCGGACAAATAGTGAATACAAATGCTCAATATTTGTCACA
AGAGCTGGCTACAATTGGAATCGATGTATATTTTCAGACTGTGGTTGGCGATAACATAGATCGGCTTCAGGAAGCGATAA
GAATTGCTCAGAAGCGTGCGGATATTATTTTGTTTTCCGGCGGTCTGGGGCCGACTCAGGATGATTTGACGAAAGAGGCG
ATAGCGGCTGTATTGGGGCGGAAATTGCACATAGATCGTCTTGCAATGGACAAGCTAGATCAATTTTTCCGTAACCGTGG
GGTAGAAATGACCGAGAATAACCGCCGGCAGGCGCTTTCTATTGAAGGTGCTACTCCACTTGAAAATGAGACAGGGCTAG
CTGTGGGCGACGCGATTGCACAGGACGGTAAATTTTATGTAGTTTTGCCTGGACCGCCTAAGGAACTCAAACCCATGTTT
GCAAACCATGCGAAACCTTGGTTGCTTCAGCAGGCATTGAGCGGTGAGGAAATGCCAATTTATTCGAAAATGCTAAAATT
TGCAGGGATCGGTGAGTCAGCTCTTGAAACCCATTTGTTAGATCTGATCCAATCCCAGACAGATCCTACGATTGCTCCTT
ATGCCAAGGAAGGGGAAGTCACGATCCGTATATCCACCAAGGCGGCCAGCGAAAGTGAAGCATTAATTAAGCTGACAGCT
ACGGAAGTAGAAATTCAGCAGCGTCTTTCGGAGTATATGTATGCAAGCGAGGATGTTGCGCTGGAGAAGGTTATCGTAGA
TCTAATGGCCAAACGCGAACTCACTGTGAGTGCGGCAGAAAGCTGTACAGGTGGAATGCTGATGGAACAGATTACTTCTA
TACCTGGCAGTGCTGCTATGTTTCAAGGTGGCATCGTGTGCTATTCCAATGAAATGAAGATGAAGTTACTCAACGTGCCT
TATGATTATTTGGAAGGGGACCATGCGCCAGGCGCAGTGAGTAAGGAAGTAGCCCTTGTGCTTGCAGAGCAGGCGAGAAT
GATCATGGATAGCGATTTTGGACTTTCAGTTACTGGTGTAGCTGGGCCTGGGTATTCCGAACGGAAGCCAGTCGGTCTAG
TGTATATTGGCATTGCTGAACGCGACAAGGAAACGGAAGTACATGAACTGAGACTGAGTGGCAACCGTGAAACAATCCGA
CTGCGATCAGTCAAAGCAATCCTGTACAGATTGTGGCGCAGGCTGGTAGAGAACGAGAAACTCTCTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(260-414)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(182-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

49.756

97.156

0.483
  cinA Streptococcus pneumoniae TIGR4

49.512

97.156

0.481
  cinA Streptococcus mitis NCTC 12261

49.268

97.156

0.479
  cinA Streptococcus pneumoniae Rx1

49.268

97.156

0.479
  cinA Streptococcus pneumoniae R6

49.268

97.156

0.479
  cinA Streptococcus pneumoniae D39

49.024

97.156

0.476
  cinA Bacillus subtilis subsp. subtilis str. 168

48.762

95.735

0.467
  cinA Streptococcus mutans UA159

45.412

100

0.457
  cinA Streptococcus suis isolate S10

44.909

90.758

0.408