Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M8286_RS00365 Genome accession   NZ_CP097577
Coordinates   65998..67179 (+) Length   393 a.a.
NCBI ID   WP_358636688.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 60998..72179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS00350 (M8286_00345) mutL 62204..64141 (+) 1938 WP_275601145.1 DNA mismatch repair endonuclease MutL -
  M8286_RS00355 (M8286_00350) ruvA 64180..64770 (+) 591 WP_275601146.1 Holliday junction branch migration protein RuvA -
  M8286_RS00360 (M8286_00355) - 65392..65961 (+) 570 WP_024398416.1 DNA-3-methyladenine glycosylase I -
  M8286_RS00365 (M8286_00360) cinA 65998..67179 (+) 1182 WP_358636688.1 competence/damage-inducible protein A Machinery gene
  M8286_RS00370 (M8286_00365) recA 67231..68382 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  M8286_RS00375 (M8286_00370) spx 68618..69016 (+) 399 WP_275601148.1 transcriptional regulator Spx -
  M8286_RS00380 (M8286_00375) - 69116..69382 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  M8286_RS00385 (M8286_00380) ruvX 69382..69801 (+) 420 WP_275601149.1 Holliday junction resolvase RuvX -
  M8286_RS00390 (M8286_00385) - 69813..70133 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -
  M8286_RS00395 (M8286_00390) - 70259..71758 (+) 1500 WP_358636697.1 IS1182 family transposase -

Sequence

Protein


Download         Length: 393 a.a.        Molecular weight: 42864.96 Da        Isoelectric Point: 4.4839

>NTDB_id=690307 M8286_RS00365 WP_358636688.1 65998..67179(+) (cinA) [Streptococcus suis strain 3112]
MKAELIAVGTEILTGQIVNTNAQFLSEKCAELGIDVYFHTAVGDNENRLLSVLEVARQRSDLVILCGGLGPTEDDLTKQT
LATFLGRKLVFDEKSMAKLDRFFASRPGRVRTPNNERQAQIVEGSQALQNPAGLAVGGMIEQDGVTYIVLPGPPSELKAM
FSESLLPLLSQSQQQLYSRVLRFFGIGESQLVTVLADLIDKQTDPTLAPYAKVGEVTLRLSTKATSQEEANLRLNQLEEE
ILQHDKLADYFYAYGEDNSLVKMVASCLIEKKQTIAIVEQGTGGLLQAELSLALADQPYFSGGKVIGQLGTESGWLSEEA
DCIRQELQADLGLVVSVVVKPESTVDNVLAKVYLALASTSGISKKEVDLGGYSWQYLRQLACLQALDFVRNTL

Nucleotide


Download         Length: 1182 bp        

>NTDB_id=690307 M8286_RS00365 WP_358636688.1 65998..67179(+) (cinA) [Streptococcus suis strain 3112]
ATGAAAGCAGAACTAATCGCCGTTGGGACGGAGATTTTGACAGGCCAAATCGTTAATACCAATGCTCAGTTCCTTTCGGA
GAAATGTGCAGAGCTGGGAATTGATGTTTATTTCCACACAGCTGTTGGAGATAATGAAAACAGACTTCTGTCTGTACTGG
AAGTAGCCCGTCAGCGGAGCGACTTGGTCATTCTCTGTGGAGGACTTGGTCCAACTGAGGATGACTTGACCAAGCAGACC
TTGGCGACCTTCTTAGGTAGAAAATTGGTCTTTGATGAAAAGTCTATGGCAAAATTAGACCGCTTCTTTGCCAGTCGCCC
AGGTCGTGTCCGTACACCAAATAATGAACGTCAGGCACAGATTGTGGAGGGAAGTCAGGCGCTACAGAATCCAGCTGGTT
TAGCTGTTGGTGGTATGATTGAGCAAGATGGGGTGACCTATATTGTTTTGCCTGGCCCACCAAGTGAGCTCAAGGCCATG
TTTTCTGAGAGTCTCTTGCCTTTATTGTCCCAATCTCAGCAGCAACTTTATTCGCGTGTCCTACGCTTTTTTGGCATTGG
TGAAAGCCAGTTGGTAACTGTTTTGGCGGACTTGATTGACAAGCAGACAGACCCAACTCTTGCACCCTATGCTAAGGTTG
GAGAGGTGACTTTACGCTTGTCCACCAAAGCGACCAGCCAAGAAGAAGCAAATCTACGTTTGAATCAGTTGGAAGAAGAA
ATCTTACAACATGACAAACTGGCAGACTATTTCTATGCCTACGGAGAGGACAATAGTTTGGTCAAAATGGTAGCGTCTTG
TTTGATAGAGAAAAAACAAACTATAGCCATCGTCGAACAGGGGACAGGTGGTCTCTTGCAGGCTGAATTGAGTTTGGCTT
TGGCTGATCAGCCGTATTTTAGCGGAGGGAAAGTCATCGGTCAGCTAGGGACAGAATCGGGCTGGCTATCAGAGGAAGCT
GACTGCATTCGGCAGGAGCTGCAAGCTGATTTAGGGCTAGTAGTGTCGGTGGTGGTCAAGCCAGAATCAACAGTAGACAA
CGTACTTGCTAAAGTATATCTAGCCTTGGCCAGTACCTCGGGTATTTCCAAAAAAGAGGTAGATTTAGGAGGTTATTCAT
GGCAATACCTTCGTCAACTTGCTTGTTTACAGGCATTAGATTTTGTACGAAACACTTTGTGA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus suis isolate S10

92.366

100

0.924
  cinA Streptococcus mutans UA159

57.421

100

0.601
  cinA Streptococcus mitis SK321

56.25

100

0.595
  cinA Streptococcus pneumoniae TIGR4

56.25

100

0.595
  cinA Streptococcus pneumoniae Rx1

56.25

100

0.595
  cinA Streptococcus pneumoniae R6

56.25

100

0.595
  cinA Streptococcus mitis NCTC 12261

56.01

100

0.593
  cinA Streptococcus pneumoniae D39

56.01

100

0.593
  cinA Bacillus subtilis subsp. subtilis str. 168

40.921

99.491

0.407