Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OUY06_RS07120 Genome accession   NZ_CP113247
Coordinates   1409897..1410511 (+) Length   204 a.a.
NCBI ID   WP_011374972.1    Uniprot ID   Q38W54
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1404897..1415511
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS07100 - 1405530..1407320 (-) 1791 WP_076645253.1 ABC transporter ATP-binding protein -
  OUY06_RS07105 - 1407322..1409067 (-) 1746 WP_016265355.1 ABC transporter transmembrane domain-containing protein -
  OUY06_RS07110 - 1409209..1409439 (-) 231 WP_011374970.1 YneF family protein -
  OUY06_RS07115 - 1409520..1409762 (-) 243 WP_025016405.1 DUF896 domain-containing protein -
  OUY06_RS07120 dinR/lexA 1409897..1410511 (+) 615 WP_011374972.1 transcriptional repressor LexA Regulator
  OUY06_RS07125 - 1410682..1411200 (-) 519 WP_278319738.1 adenine phosphoribosyltransferase -
  OUY06_RS07130 recJ 1411224..1413536 (-) 2313 WP_025016402.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  OUY06_RS07135 galE 1413681..1414673 (+) 993 WP_035146095.1 UDP-glucose 4-epimerase GalE -
  OUY06_RS07140 - 1414759..1415124 (+) 366 WP_011374976.1 DUF1304 domain-containing protein -
  OUY06_RS07145 - 1415141..1415467 (+) 327 WP_011374977.1 heavy metal-binding domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22567.96 Da        Isoelectric Point: 4.9705

>NTDB_id=690307 OUY06_RS07120 WP_011374972.1 1409897..1410511(+) (dinR/lexA) [Latilactobacillus sakei strain CNSC001WB]
MTKTESKQLEVLRFIHERVQDKGYPPTVREICEAVNLSSTSTVHGHLARLEKKGLLQKDPTKPRAIELTPAGLTAIGATP
QKIPVLGVVTAGVPILAVEEATDYFPLPPSLQTEQDLFMLTIRGESMINAGILDGDEVIIRKQSTADNGDIVIAMTAEDE
ATCKRFFKEADHYRLQPENDTFEPIILNEVSILGKVVGLYRDRM

Nucleotide


Download         Length: 615 bp        

>NTDB_id=690307 OUY06_RS07120 WP_011374972.1 1409897..1410511(+) (dinR/lexA) [Latilactobacillus sakei strain CNSC001WB]
ATGACTAAAACTGAATCCAAACAATTAGAGGTCTTACGTTTTATTCACGAACGTGTTCAAGACAAAGGTTATCCACCAAC
GGTCCGCGAGATTTGCGAAGCCGTTAATTTATCGTCCACTTCTACTGTCCATGGCCATTTAGCCCGACTTGAGAAGAAGG
GCTTATTACAAAAGGATCCCACTAAACCACGGGCGATCGAGTTAACGCCCGCTGGCCTAACGGCAATTGGGGCAACACCC
CAGAAAATCCCAGTATTAGGGGTGGTTACTGCCGGTGTGCCTATCTTAGCAGTTGAAGAAGCAACTGATTACTTCCCGCT
TCCACCTAGTTTGCAAACCGAACAAGATTTGTTCATGCTAACAATTCGTGGTGAAAGTATGATTAACGCCGGTATCTTAG
ATGGCGACGAAGTTATCATTCGCAAGCAATCAACCGCCGATAATGGCGATATTGTCATTGCGATGACTGCCGAAGATGAA
GCAACCTGCAAACGGTTCTTCAAAGAAGCAGATCACTATCGTCTCCAACCAGAAAACGATACGTTTGAACCAATCATTTT
AAATGAAGTCAGCATTCTAGGAAAGGTCGTTGGCCTTTACCGAGATCGCATGTAA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(3-65)

Peptidase S24-like (Peptidase_S24)

(84-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38W54

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

59.901

99.02

0.593