Detailed information NTG0690090

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: PAC13_RS27555
• Genome accession: NZ_CP097557
• Coordinates: 5735981..5737198 (+)
• Length: 405 a.a.
• NCBI ID: WP_023092874.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain C1.3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5730981..5742198

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PAC13_RS27530 (PAC13_27480)	nadC	5731084..5731932 (+)	849	WP_023092870.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PAC13_RS27540 (PAC13_27490)	-	5732113..5733426 (-)	1314	WP_023980542.1	O-antigen ligase family protein	-
PAC13_RS27545 (PAC13_27495)	-	5733582..5734046 (-)	465	WP_023092872.1	pilin	-
PAC13_RS27550 (PAC13_27500)	pilB	5734277..5735977 (+)	1701	WP_023092873.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PAC13_RS27555 (PAC13_27505)	pilC	5735981..5737198 (+)	1218	WP_023092874.1	type II secretion system F family protein	Machinery gene
PAC13_RS27560 (PAC13_27510)	pilD	5737199..5738071 (+)	873	WP_023092875.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
PAC13_RS27565 (PAC13_27515)	coaE	5738068..5738679 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
PAC13_RS27570 (PAC13_27520)	yacG	5738676..5738876 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
PAC13_RS27575 (PAC13_27525)	-	5738913..5739122 (-)	210	WP_003094660.1	hypothetical protein	-
PAC13_RS27580 (PAC13_27530)	-	5739228..5739917 (-)	690	WP_003094662.1	energy-coupling factor ABC transporter permease	-
PAC13_RS27585 (PAC13_27535)	-	5739914..5740384 (-)	471	WP_003094664.1	hypothetical protein	-
PAC13_RS27590 (PAC13_27540)	-	5740381..5740806 (-)	426	WP_003094666.1	GNAT family N-acetyltransferase	-
PAC13_RS27595 (PAC13_27545)	-	5740939..5741568 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
PAC13_RS27600 (PAC13_27550)	-	5741565..5742014 (+)	450	WP_003094670.1	MOSC domain-containing protein	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44028.83 Da
• Isoelectric Point: 9.8103

>NTDB_id=690090 PAC13_RS27555 WP_023092874.1 5735981..5737198(+) (pilC) [Pseudomonas aeruginosa strain C1.3]
MADKALKTSVFVWEGTDKKGTKVKGELSSQNPTLVKAQLRKQGITPVKVRKKGISLLGAGKKIKPMDIALFTRQMSTMMA
AGVPLLQSFDIISEGFDNPNMRKLVEEIKQEVASGNSLANSLRKKPQYFDSLYCNLVDAGEQSGALETLLDRVATYKEKT
EALKAKIKKAMTYPIAVIVVAIIVSAILLIKVVPQFQSVFEGFGAELPAFTQMVINISNVLQEWWLLVLLMMGGAGFLLN
HAYKRSEKFRDATDRTVLKLPIVGAILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRDAVGKIKQDVSTGM
QLNFSMRTTNIFPSMAIQMTAIGEESGALDDMLAKVAGFYEQEVDNAVDNLTALMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGNVV

Nucleotide

• Length: 1218 bp

>NTDB_id=690090 PAC13_RS27555 WP_023092874.1 5735981..5737198(+) (pilC) [Pseudomonas aeruginosa strain C1.3]
ATGGCGGACAAAGCGTTAAAAACCAGTGTCTTCGTATGGGAAGGCACTGACAAGAAAGGCACCAAGGTCAAGGGCGAGCT
GTCCAGCCAGAACCCGACCCTGGTCAAGGCGCAACTGCGCAAGCAGGGCATCACGCCGGTCAAGGTCCGCAAGAAAGGCA
TTTCCCTGCTGGGGGCGGGGAAGAAGATCAAGCCTATGGACATCGCACTGTTCACCCGCCAGATGTCCACCATGATGGCC
GCCGGCGTGCCACTGCTGCAGTCGTTCGACATCATCAGCGAAGGCTTCGACAATCCGAACATGCGCAAGCTGGTGGAGGA
GATCAAGCAGGAAGTCGCCAGCGGCAACAGCCTGGCCAACTCGCTGCGCAAGAAGCCGCAGTACTTCGACTCGCTCTACT
GCAACCTGGTGGACGCCGGCGAACAATCCGGCGCCCTGGAAACCCTGCTCGACCGGGTCGCCACCTACAAGGAAAAGACC
GAGGCGCTGAAGGCCAAGATCAAGAAGGCCATGACCTACCCAATCGCGGTGATCGTCGTCGCCATCATCGTTTCGGCGAT
CCTACTGATCAAGGTGGTGCCGCAGTTCCAGTCGGTGTTCGAGGGCTTCGGCGCCGAACTGCCGGCCTTCACCCAAATGG
TCATCAATATCTCCAACGTGCTCCAGGAATGGTGGCTCCTGGTACTGCTGATGATGGGCGGCGCCGGCTTCCTGCTGAAC
CACGCCTACAAGCGTTCGGAGAAGTTTCGCGACGCCACCGACCGCACGGTACTGAAGCTGCCGATCGTCGGCGCCATCCT
CTACAAATCCGCCGTGGCACGCTACGCGCGGACGCTGTCGACCACCTTCGCCGCCGGCGTGCCATTGGTGGAAGCCCTCG
ACTCGGTTTCCGGCGCCACCGGCAACGTGGTGTTCAGGGACGCGGTGGGCAAGATCAAGCAGGACGTTTCCACCGGCATG
CAGCTGAACTTCTCCATGCGCACCACCAACATCTTCCCCAGCATGGCCATCCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGACGACATGCTGGCCAAGGTCGCTGGCTTCTACGAGCAGGAAGTGGATAATGCCGTGGACAACCTGACCGCCC
TGATGGAACCGATGATCATGGCGGTCCTCGGGGTCCTGGTCGGTGGCCTGATCATCGCCATGTACCTGCCGATCTTCCAG
TTGGGCAACGTCGTCTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (276-397)

• Type II secretion system (T2SS), protein F (T2SSF) (71-194)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Pseudomonas stutzeri DSM 10701	78.765	100	0.788
pilC	Acinetobacter baylyi ADP1	61.029	100	0.615
pilC	Acinetobacter baumannii D1279779	60.396	99.753	0.602
pilC	Legionella pneumophila strain ERS1305867	54.293	97.778	0.531
pilG	Neisseria gonorrhoeae MS11	46.287	99.753	0.462
pilG	Neisseria meningitidis 44/76-A	45.771	99.259	0.454
pilC	Vibrio cholerae strain A1552	41.728	100	0.417
pilC	Vibrio campbellii strain DS40M4	40.898	99.012	0.405
pilC	Thermus thermophilus HB27	37.905	99.012	0.375