Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M5E02_RS08335 Genome accession   NZ_CP097373
Coordinates   1648392..1649642 (+) Length   416 a.a.
NCBI ID   WP_252058088.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1643392..1654642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS08310 (M5E02_08310) - 1644810..1645541 (+) 732 WP_252058087.1 SDR family oxidoreductase -
  M5E02_RS08315 (M5E02_08315) - 1645615..1645872 (+) 258 WP_048239821.1 DUF3243 domain-containing protein -
  M5E02_RS08320 (M5E02_08320) - 1646004..1646795 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  M5E02_RS08325 (M5E02_08325) - 1646819..1647718 (+) 900 WP_268429880.1 helix-turn-helix domain-containing protein -
  M5E02_RS08330 (M5E02_08330) pgsA 1647794..1648375 (+) 582 WP_047202208.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M5E02_RS08335 (M5E02_08335) cinA 1648392..1649642 (+) 1251 WP_252058088.1 competence/damage-inducible protein A Machinery gene
  M5E02_RS08340 (M5E02_08340) recA 1649821..1650864 (+) 1044 WP_047202210.1 recombinase RecA Machinery gene
  M5E02_RS08345 (M5E02_08345) - 1651008..1652183 (+) 1176 WP_252058089.1 serine hydrolase domain-containing protein -
  M5E02_RS08350 (M5E02_08350) rny 1652417..1653979 (+) 1563 WP_252058090.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45595.65 Da        Isoelectric Point: 4.7478

>NTDB_id=689199 M5E02_RS08335 WP_252058088.1 1648392..1649642(+) (cinA) [Bacillus safensis strain AHB2]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKQAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFVQEDDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAQILARVGEYFYGYGDTSLVREASKALLEHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=689199 M5E02_RS08335 WP_252058088.1 1648392..1649642(+) (cinA) [Bacillus safensis strain AHB2]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTATTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAACTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AACAGGCCATTCAGGTGGCGCAGGAAAGATCTAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACCAAAGATGACTTA
ACAAAAGAAACGATTGCGAGCACGCTCGGGAAAGAGCTTGTACTAAATGAAGAAGCATTTGAATCGATTCAAGACTACTT
TCGAAAGACCGGCCGCGATATGTCACCAAACAACCGTAAGCAGGCGCTCGTTCTAGAAGGATCTGATGTGCTTGTGAACC
GTTTCGGGATGGCCCCAGGTATGTTTGTTCAAGAAGACGATACGTTTTATATGCTTCTTCCTGGACCGCCAAGTGAACTG
CACCCGATGTTTGAAAACGAGGCAAAGCCGCTGATTTCTGAGAAACTTGGCTTAAAGGAAAAAATCGTGTCTGTTGTTCT
GCGTTTCTTCGGAATCGGTGAATCGCAGCTTGAAACAGACCTAGAAGACTTAATTGATGCTCAAACGAATCCGACGATTG
CACCACTCGCATCTGATGGTGAAGTGACGCTAAGGCTAACTGCTAAGCATGAGGATGAAAAAGAAACAGAGCGTCTGTTA
AAAGAAACAGAAGCGCAAATTTTAGCGCGGGTAGGTGAGTATTTCTACGGGTATGGGGATACATCACTTGTCCGCGAAGC
GTCCAAAGCCTTGCTCGAACACGGAAAAACAGTAGCAGCAGCAGAAAGCCTGACTGGCGGAATGTTCTCCGAATGGCTGA
CAGATCTCGAAGGAGCATCATCCATTTTGAACGGAAGTGTGGTTTGTTATACAAACCAAGTCAAACAGCAGGTACTTGGC
TGCCGGGAGGAAACATTGTCTTCCCATGGCGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCATGAGGGCCAGCCTGTTGGAAAAGTGT
TCATTGGACTATCGACAAAAGACCAGACGGACGTATTTGAATGGATGTTTACTGGCAGCCGGTCGGGCATTCGAAAGCGC
GCTGTGAAATATGGCCTGCATCACTTACTCAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(262-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

75.181

99.76

0.75
  cinA Streptococcus mitis SK321

47.981

100

0.486
  cinA Streptococcus pneumoniae TIGR4

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.743

100

0.483
  cinA Streptococcus mutans UA159

48.077

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.506

100

0.481
  cinA Streptococcus pneumoniae R6

47.506

100

0.481
  cinA Streptococcus pneumoniae D39

47.268

100

0.478
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392