Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   M5598_RS15615 Genome accession   NZ_CP097355
Coordinates   3305632..3306744 (-) Length   370 a.a.
NCBI ID   WP_031817255.1    Uniprot ID   A0AA46UJ09
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3300632..3311744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS15585 (M5598_15565) hemF 3301094..3302011 (-) 918 WP_021454254.1 oxygen-dependent coproporphyrinogen oxidase -
  M5598_RS15590 (M5598_15570) - 3302059..3302616 (-) 558 WP_015297509.1 L-threonylcarbamoyladenylate synthase -
  M5598_RS15595 (M5598_15575) purE 3302816..3303301 (+) 486 WP_005394016.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  M5598_RS15600 (M5598_15580) - 3303306..3304439 (+) 1134 WP_031817253.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  M5598_RS15605 (M5598_15585) - 3304502..3305071 (-) 570 WP_031817254.1 type I DNA topoisomerase -
  M5598_RS15610 (M5598_15590) - 3305150..3305629 (-) 480 WP_005461440.1 DUF494 family protein -
  M5598_RS15615 (M5598_15595) dprA 3305632..3306744 (-) 1113 WP_031817255.1 DNA-processing protein DprA Machinery gene
  M5598_RS15620 (M5598_15600) - 3306728..3307822 (-) 1095 WP_025632360.1 LysM peptidoglycan-binding domain-containing protein -
  M5598_RS15625 (M5598_15605) def 3307961..3308479 (+) 519 WP_025632358.1 peptide deformylase -
  M5598_RS15630 (M5598_15610) fmt 3308513..3309460 (+) 948 WP_005461453.1 methionyl-tRNA formyltransferase -
  M5598_RS15635 (M5598_15615) rsmB 3309541..3310824 (+) 1284 WP_031817256.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39929.64 Da        Isoelectric Point: 6.4129

>NTDB_id=688996 M5598_RS15615 WP_031817255.1 3305632..3306744(-) (dprA) [Vibrio parahaemolyticus strain 16-VB00198]
MKPRNNDSDLAAWLKLSCLPGIGGVKMNKLLAKDTPRNIINSSSDQLYQLGLTNKQLQAWASADKEVDACLMWLATSTNH
HILTLADPLYPPLLKQVVAPPPLLFVEGNPTFLSQPQIAMVGSRNASFDGLHHARQFAAELAQQELMVTSGLALGIDGHA
HDGALQVGGKTIAVLGSGLEHIYPARHRGLAQRVAENGALVSEFRPNAKPRAENFPRRNRIISGLSLGVLVVEAAEKSGS
LITARYALEQGREVFALPASINARNASGGNQLIRNGACLVEKTQDILDEIQSLLDWSVNQSIDLFSTLNDEEELPFPQLL
ANVGSEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=688996 M5598_RS15615 WP_031817255.1 3305632..3306744(-) (dprA) [Vibrio parahaemolyticus strain 16-VB00198]
ATGAAACCACGCAATAACGACAGTGACCTTGCTGCCTGGCTTAAGCTGAGTTGCTTGCCAGGCATCGGTGGGGTCAAAAT
GAATAAGCTGCTCGCCAAAGATACGCCTCGCAATATCATCAATTCCTCTTCTGATCAGCTCTATCAATTGGGTTTGACGA
ACAAACAGTTGCAAGCTTGGGCTTCGGCCGATAAAGAGGTCGATGCTTGTTTAATGTGGCTAGCCACTTCTACAAATCAT
CACATCCTGACGCTGGCCGATCCTTTATATCCCCCTTTACTCAAGCAAGTTGTCGCTCCGCCTCCGTTGTTATTTGTCGA
GGGGAATCCTACCTTTTTATCGCAACCACAAATTGCCATGGTGGGCAGCCGGAACGCCAGTTTTGATGGTTTACACCATG
CACGTCAATTTGCGGCAGAGTTGGCTCAACAAGAATTGATGGTCACTAGCGGCTTAGCGCTTGGGATTGATGGCCATGCT
CATGATGGTGCGCTACAAGTGGGTGGTAAGACGATAGCTGTGCTGGGGTCTGGTTTAGAACATATTTATCCTGCTCGTCA
TCGTGGCTTAGCGCAGCGAGTAGCAGAAAATGGCGCACTGGTTTCTGAGTTTCGCCCCAATGCCAAGCCTCGCGCAGAAA
ACTTTCCGCGTCGAAACCGTATTATTAGCGGCTTATCGTTAGGTGTGTTAGTGGTGGAAGCGGCCGAGAAAAGTGGCTCG
CTTATTACCGCGCGTTATGCCCTTGAGCAAGGGCGAGAAGTGTTTGCGCTGCCGGCCTCAATTAATGCTCGCAATGCTAG
TGGTGGTAACCAATTGATTCGCAACGGTGCCTGCCTCGTAGAGAAAACCCAAGATATCCTCGATGAAATACAGTCTTTAC
TCGATTGGTCTGTTAATCAAAGTATCGATTTATTTTCTACGTTAAATGATGAAGAAGAATTGCCATTTCCTCAGCTGTTA
GCTAACGTAGGAAGTGAAGCTACACCGGTTGATATTCTTGCAAACAGGACCAATATACCTGTCCAAGAAGTCATGATGCA
GCTCTTAGAGCTTGAGCTCTCTGGGCATGTTGTTGCGGTTTCAGGTGGCTATATTCGAAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(318-363)

DNA recombination-mediator protein A (DNA_processg_A)

(77-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

84.054

100

0.841
  dprA Vibrio cholerae strain A1552

58.649

100

0.586
  dprA Glaesserella parasuis strain SC1401

46.917

100

0.473
  dprA Haemophilus influenzae Rd KW20

46.588

91.081

0.424
  dprA Legionella pneumophila strain ERS1305867

47.546

88.108

0.419
  dprA Neisseria meningitidis strain C311

37.949

100

0.4
  dprA Neisseria meningitidis MC58

37.949

100

0.4
  dprA Neisseria gonorrhoeae MS11

36.082

100

0.378
  dprA Neisseria gonorrhoeae strain FA1090

35.825

100

0.376