Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M4S28_RS05705 Genome accession   NZ_CP097293
Coordinates   1268846..1269145 (+) Length   99 a.a.
NCBI ID   WP_102446061.1    Uniprot ID   -
Organism   Vibrio sp. J383     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1263846..1274145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS05695 (M4S28_05695) - 1266226..1266498 (+) 273 WP_004736083.1 HU family DNA-binding protein -
  M4S28_RS05700 (M4S28_05700) ppiD 1266719..1268584 (+) 1866 WP_249632450.1 peptidylprolyl isomerase -
  M4S28_RS05705 (M4S28_05705) comEA 1268846..1269145 (+) 300 WP_102446061.1 ComEA family DNA-binding protein Machinery gene
  M4S28_RS05710 (M4S28_05710) rrtA 1269136..1269684 (-) 549 WP_065682117.1 rhombosortase -
  M4S28_RS05715 (M4S28_05715) - 1269694..1270293 (+) 600 WP_032554831.1 tRNA-uridine aminocarboxypropyltransferase -
  M4S28_RS05720 (M4S28_05720) - 1270320..1271663 (-) 1344 WP_249632451.1 anti-phage deoxyguanosine triphosphatase -
  M4S28_RS05725 (M4S28_05725) yfbR 1271718..1272302 (-) 585 WP_017060613.1 5'-deoxynucleotidase -
  M4S28_RS05730 (M4S28_05730) - 1272472..1273704 (-) 1233 WP_004736094.1 pyridoxal phosphate-dependent aminotransferase -

Sequence

Protein


Download         Length: 99 a.a.        Molecular weight: 10739.16 Da        Isoelectric Point: 4.2092

>NTDB_id=688315 M4S28_RS05705 WP_102446061.1 1268846..1269145(+) (comEA) [Vibrio sp. J383]
MRTIYSTLLLSFLMALSSPAFSDSPSKAELYDGIEITVNINTATAEELSALLVGVGDKKAQEIVDYRDQNGAFTIADDLV
SVKGIGEATVEKNRERIQL

Nucleotide


Download         Length: 300 bp        

>NTDB_id=688315 M4S28_RS05705 WP_102446061.1 1268846..1269145(+) (comEA) [Vibrio sp. J383]
ATGCGCACGATATATTCAACACTACTTCTTTCATTTCTGATGGCCCTGAGCTCCCCAGCGTTTTCTGATAGCCCATCTAA
AGCTGAGCTTTACGATGGCATCGAGATTACGGTAAACATCAATACTGCGACGGCAGAAGAACTCTCAGCGCTATTAGTTG
GTGTTGGGGACAAGAAAGCCCAAGAGATCGTCGATTACAGAGATCAAAACGGTGCGTTTACGATTGCTGATGATTTGGTG
AGTGTGAAAGGGATAGGTGAAGCGACGGTTGAAAAGAACCGCGAAAGAATTCAACTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(37-97)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

56.701

97.98

0.556
  comEA Vibrio cholerae strain A1552

56.701

97.98

0.556
  comEA Vibrio campbellii strain DS40M4

53.261

92.929

0.495
  comEA Vibrio parahaemolyticus RIMD 2210633

53.846

91.919

0.495
  comEA Acinetobacter baylyi ADP1

52.439

82.828

0.434
  comE1/comEA Haemophilus influenzae Rd KW20

36.937

100

0.414
  comEA/comE1 Glaesserella parasuis strain SC1401

60

60.606

0.364
  comEA Legionella pneumophila str. Paris

35.294

100

0.364
  comEA Legionella pneumophila strain ERS1305867

35.294

100

0.364