Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M3M40_RS03285 Genome accession   NZ_CP097119
Coordinates   616843..618084 (-) Length   413 a.a.
NCBI ID   WP_252767358.1    Uniprot ID   A0A9Q9E146
Organism   Fructilactobacillus cliffordii strain KI4_B1     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 611843..623084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3M40_RS03275 (M3M40_03275) - 614253..615062 (-) 810 WP_252767356.1 TIGR00282 family metallophosphoesterase -
  M3M40_RS03280 (M3M40_03280) rny 615150..616709 (-) 1560 WP_252767357.1 ribonuclease Y -
  M3M40_RS03285 (M3M40_03285) cinA 616843..618084 (-) 1242 WP_252767358.1 competence/damage-inducible protein A Machinery gene
  M3M40_RS03290 (M3M40_03290) pgsA 618121..618708 (-) 588 WP_252767359.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M3M40_RS03295 (M3M40_03295) - 618771..619679 (-) 909 WP_252767360.1 helix-turn-helix domain-containing protein -
  M3M40_RS03300 (M3M40_03300) yfmH 619748..621013 (-) 1266 WP_252767361.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  M3M40_RS03305 (M3M40_03305) yfmF 620997..622265 (-) 1269 WP_252767362.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 44592.80 Da        Isoelectric Point: 5.2543

>NTDB_id=687327 M3M40_RS03285 WP_252767358.1 616843..618084(-) (cinA) [Fructilactobacillus cliffordii strain KI4_B1]
MKAEIISVGTELLLGEIVDTSTPFIAQHLANLGIDVYFEATVGDNPERLTTTIQRAARRSELVVLTGGLGPTEDDLTKTT
LAKLVNRPLVPEPQSMNKIKTFYAETKRPQPVHADLMGEIIEGATVLPNEVGFAVGILLTTKQCHYLVLPGPPAELQPMF
EKEAEPRLAQLTQHGQVIKSRVMRFFGIGEPALEDCLHSLIAGQQNPTLATYAKQNEVTLRITASGSEKAAVARLLDETE
QQVLHLAGQYFYGYGDDNSLEQVVVQLLQQRHLTITAAESLTSGLFQSTLANVAGASQIFSGGFVTYAATTKEQLVNVPA
ATIATHGVVSKETAVAMATGAQRQLQTDLAISFTGVAGPDELEGHPAGFFWLGLALPDGRVLTRSVQFSSSRNSVRDYAV
KSGLKLIYDYFQG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=687327 M3M40_RS03285 WP_252767358.1 616843..618084(-) (cinA) [Fructilactobacillus cliffordii strain KI4_B1]
ATGAAAGCAGAAATTATTAGCGTGGGAACGGAGCTGTTACTGGGCGAAATTGTGGATACCAGTACTCCATTCATTGCCCA
GCATTTGGCAAATTTGGGCATCGATGTGTACTTTGAGGCCACGGTGGGAGATAACCCCGAACGCTTAACTACGACCATTC
AACGAGCCGCACGACGCAGTGAACTAGTAGTTTTAACTGGGGGACTCGGTCCGACCGAAGACGATTTAACGAAAACCACG
TTAGCTAAACTAGTGAATCGGCCGTTGGTTCCGGAACCGCAGTCAATGAACAAAATTAAGACCTTTTATGCAGAGACCAA
ACGTCCACAACCTGTCCACGCTGACCTGATGGGGGAAATCATCGAAGGAGCAACTGTCTTACCCAACGAAGTCGGATTTG
CCGTTGGAATTTTATTGACCACGAAACAGTGTCATTATCTGGTATTACCAGGTCCTCCGGCTGAGTTGCAACCAATGTTT
GAAAAGGAAGCAGAACCGCGATTAGCGCAGCTAACCCAACACGGTCAGGTGATCAAGTCCCGGGTCATGCGTTTTTTTGG
GATTGGCGAACCAGCATTAGAGGACTGCTTGCACTCGTTGATTGCCGGACAGCAGAATCCGACGCTCGCTACGTATGCTA
AGCAAAATGAGGTTACGTTACGAATCACTGCTAGTGGGAGTGAGAAGGCAGCCGTAGCTCGGTTGCTGGATGAAACAGAA
CAGCAGGTGCTACACCTAGCAGGACAATATTTCTACGGCTATGGTGATGATAATTCACTGGAACAGGTGGTAGTTCAGCT
TTTGCAACAACGCCATTTAACCATTACCGCAGCCGAATCGTTAACCAGCGGACTTTTTCAAAGTACGTTAGCTAACGTTG
CCGGAGCATCGCAGATTTTTTCGGGGGGCTTTGTTACTTATGCTGCTACCACGAAAGAGCAATTAGTAAATGTTCCTGCT
GCTACGATTGCCACTCATGGAGTAGTTTCAAAGGAAACGGCTGTTGCCATGGCAACGGGAGCTCAACGACAATTACAAAC
TGATTTAGCCATTTCATTTACCGGAGTGGCTGGACCAGATGAGCTAGAAGGTCATCCGGCGGGCTTTTTTTGGTTGGGAC
TGGCCTTACCGGACGGACGGGTGCTTACTCGCAGCGTCCAGTTTTCTAGCTCGCGAAATTCCGTCCGTGACTATGCGGTT
AAATCAGGGTTGAAATTAATTTATGATTATTTCCAAGGTTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(4-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

47.494

100

0.482
  cinA Streptococcus pneumoniae TIGR4

47.002

100

0.475
  cinA Streptococcus pneumoniae D39

46.763

100

0.472
  cinA Streptococcus pneumoniae Rx1

46.763

100

0.472
  cinA Streptococcus pneumoniae R6

46.763

100

0.472
  cinA Streptococcus mitis NCTC 12261

46.301

100

0.47
  cinA Streptococcus mutans UA159

47.087

99.758

0.47
  cinA Bacillus subtilis subsp. subtilis str. 168

43.842

98.305

0.431
  cinA Streptococcus suis isolate S10

39.844

92.978

0.37