Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M2905_RS07440 Genome accession   NZ_CP097051
Coordinates   1536199..1537452 (+) Length   417 a.a.
NCBI ID   WP_248856528.1    Uniprot ID   -
Organism   Vagococcus lutrae strain AT19     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531199..1542452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2905_RS07415 (M2905_07415) - 1531294..1532565 (+) 1272 WP_248848414.1 pitrilysin family protein -
  M2905_RS07420 (M2905_07420) - 1532555..1533856 (+) 1302 WP_248856524.1 pitrilysin family protein -
  M2905_RS07425 (M2905_07425) - 1533859..1534584 (+) 726 WP_248856525.1 SDR family NAD(P)-dependent oxidoreductase -
  M2905_RS07430 (M2905_07430) - 1534609..1535457 (+) 849 WP_248856526.1 RodZ domain-containing protein -
  M2905_RS07435 (M2905_07435) pgsA 1535481..1536059 (+) 579 WP_248856527.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M2905_RS07440 (M2905_07440) cinA 1536199..1537452 (+) 1254 WP_248856528.1 competence/damage-inducible protein A Machinery gene
  M2905_RS07445 (M2905_07445) recA 1537538..1538575 (+) 1038 WP_023605862.1 recombinase RecA Machinery gene
  M2905_RS07450 (M2905_07450) rny 1538794..1540353 (+) 1560 WP_126762880.1 ribonuclease Y -
  M2905_RS07455 (M2905_07455) - 1540505..1541368 (+) 864 WP_126762878.1 alpha/beta fold hydrolase -
  M2905_RS07460 (M2905_07460) - 1541391..1541930 (+) 540 WP_023605865.1 DUF308 domain-containing protein -
  M2905_RS07465 (M2905_07465) - 1542106..1542306 (+) 201 WP_023605866.1 cold-shock protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 45928.11 Da        Isoelectric Point: 4.5205

>NTDB_id=686693 M2905_RS07440 WP_248856528.1 1536199..1537452(+) (cinA) [Vagococcus lutrae strain AT19]
MRAEIIAVGTELLIGQVVNTNATFLSEELVGIGYDIYYHSVVGDNPERLKELIGQASQRSELIVLCGGLGPTEDDLTRDV
LADYLKEPMVLDPEGYDKIDTYMTRSGREMTENNRRQALTIQGGQAIPNDTGLAVGTFYQAETTSYLVLPGPPRELKPMF
YHHVIPLLKQQLPQTDQLYSRVLRFFGIGESQLVLELETLIHEQTNPTIAPYAGDTEVRLRLTVKATDETTANEMLEEME
EKIMSQVGDYFYGYGEENSLIKETVKALQAAKRTVASAESLTAGMFMSALGDVPGVSSVFNGGFVTYTNEMKRCLLKIDS
ALLAQHGAVSEACACAMAEEARVLTKSDYGVALTGVAGPDKSEGEPVGSVWIGLSSAISGTQAYHFQLQRDRQYIRQSAM
MRAMDLLRRQVIAENHD

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=686693 M2905_RS07440 WP_248856528.1 1536199..1537452(+) (cinA) [Vagococcus lutrae strain AT19]
ATGCGAGCAGAAATTATCGCAGTGGGTACGGAGCTATTAATTGGTCAAGTGGTTAATACCAATGCGACTTTTTTATCAGA
AGAATTAGTGGGGATTGGTTATGATATTTATTATCACAGTGTGGTAGGGGATAACCCAGAGCGTTTAAAAGAGTTAATTG
GACAAGCCTCTCAGCGAAGTGAATTGATTGTATTGTGTGGGGGATTAGGACCAACAGAAGATGATTTAACGCGAGATGTG
TTAGCTGATTATTTAAAGGAGCCGATGGTGTTAGATCCAGAGGGTTACGATAAGATTGATACCTATATGACACGCTCTGG
TCGCGAGATGACGGAAAATAATCGTAGGCAAGCGTTAACGATTCAAGGAGGTCAAGCGATACCGAATGATACAGGTTTAG
CAGTCGGGACTTTTTATCAAGCTGAGACGACGAGTTATTTAGTCTTACCAGGACCGCCGCGTGAGTTGAAACCGATGTTT
TATCATCATGTTATTCCATTGTTAAAGCAGCAGTTACCTCAAACCGACCAACTGTATTCTCGTGTATTACGCTTTTTTGG
TATCGGGGAGTCACAGTTAGTTTTAGAATTAGAAACATTAATTCACGAGCAAACCAATCCGACCATTGCGCCATACGCAG
GAGATACAGAAGTTCGTTTACGACTGACAGTCAAAGCTACAGATGAGACGACAGCAAATGAGATGCTAGAGGAGATGGAA
GAAAAAATTATGTCTCAAGTAGGGGATTATTTCTATGGTTATGGGGAAGAAAATAGTTTGATTAAAGAAACTGTCAAGGC
GTTGCAAGCCGCGAAGCGAACGGTCGCCTCGGCCGAAAGTTTGACTGCCGGAATGTTTATGAGTGCATTGGGAGACGTTC
CAGGTGTTTCTAGTGTCTTTAATGGTGGCTTTGTCACATATACGAATGAGATGAAACGTTGCTTATTAAAGATTGATTCC
GCTTTGCTTGCTCAACACGGGGCTGTTAGTGAGGCGTGTGCGTGTGCGATGGCAGAAGAGGCTCGTGTGTTAACAAAGAG
TGATTATGGCGTAGCATTAACAGGCGTAGCAGGTCCAGATAAAAGTGAGGGTGAGCCTGTAGGAAGTGTCTGGATTGGCC
TTTCTTCTGCGATAAGTGGGACACAGGCTTATCATTTTCAACTTCAGCGAGACCGTCAATATATTCGGCAAAGTGCCATG
ATGCGCGCAATGGACTTATTACGTCGTCAAGTGATAGCAGAAAATCACGACTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

49.409

100

0.501
  cinA Streptococcus pneumoniae R6

48.936

100

0.496
  cinA Streptococcus pneumoniae Rx1

48.936

100

0.496
  cinA Streptococcus mitis NCTC 12261

48.7

100

0.494
  cinA Streptococcus mitis SK321

48.7

100

0.494
  cinA Streptococcus pneumoniae D39

48.7

100

0.494
  cinA Streptococcus mutans UA159

47.971

100

0.482
  cinA Bacillus subtilis subsp. subtilis str. 168

46.21

98.082

0.453
  cinA Streptococcus suis isolate S10

42.961

98.801

0.424