Detailed information
Bioinformatically predicted
Overview
| Name | comR | Type | Regulator |
| Locus tag | M2919_RS04610 | Genome accession | NZ_CP097017 |
| Coordinates | 962155..962364 (-) | Length | 69 a.a. |
| NCBI ID | WP_248849414.1 | Uniprot ID | - |
| Organism | Vagococcus lutrae strain AT46b | ||
| Function | activate transcription of comX (predicted from homology) Competence regulation |
||
Genomic Context
Location: 957155..967364
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2919_RS04575 (M2919_04575) | - | 957928..958350 (+) | 423 | WP_000804885.1 | sigma-70 family RNA polymerase sigma factor | - |
| M2919_RS04580 (M2919_04580) | - | 958347..958577 (+) | 231 | WP_000857133.1 | helix-turn-helix domain-containing protein | - |
| M2919_RS10065 | - | 958641..958769 (-) | 129 | WP_000301356.1 | hypothetical protein | - |
| M2919_RS04585 (M2919_04585) | - | 958803..959054 (-) | 252 | WP_001845478.1 | hypothetical protein | - |
| M2919_RS04590 (M2919_04590) | - | 959038..959241 (+) | 204 | WP_000814511.1 | excisionase | - |
| M2919_RS04595 (M2919_04595) | - | 959323..960540 (+) | 1218 | WP_001291561.1 | tyrosine-type recombinase/integrase | - |
| M2919_RS04600 (M2919_04600) | - | 960807..961073 (+) | 267 | WP_248849413.1 | transposase | - |
| M2919_RS04605 (M2919_04605) | - | 961085..961948 (+) | 864 | WP_248849478.1 | IS3 family transposase | - |
| M2919_RS10105 | - | 961989..962162 (-) | 174 | WP_420857193.1 | hypothetical protein | - |
| M2919_RS04610 (M2919_04610) | comR | 962155..962364 (-) | 210 | WP_248849414.1 | helix-turn-helix domain-containing protein | Regulator |
| M2919_RS04615 (M2919_04615) | - | 962524..963252 (-) | 729 | WP_152514069.1 | hypothetical protein | - |
| M2919_RS04620 (M2919_04620) | - | 963674..965068 (+) | 1395 | WP_248849415.1 | APC family permease | - |
| M2919_RS04625 (M2919_04625) | - | 965072..966682 (+) | 1611 | WP_248849416.1 | amidohydrolase | - |
Sequence
Protein
Download Length: 69 a.a. Molecular weight: 8051.47 Da Isoelectric Point: 10.0608
>NTDB_id=686218 M2919_RS04610 WP_248849414.1 962155..962364(-) (comR) [Vagococcus lutrae strain AT46b]
MCNVKRNIGEKIKSARLQQNLTREVVCNDESEITIRQLARIESGESLPTLPKLRFLAKKLNIYIYKLFD
MCNVKRNIGEKIKSARLQQNLTREVVCNDESEITIRQLARIESGESLPTLPKLRFLAKKLNIYIYKLFD
Nucleotide
Download Length: 210 bp
>NTDB_id=686218 M2919_RS04610 WP_248849414.1 962155..962364(-) (comR) [Vagococcus lutrae strain AT46b]
ATGTGTAATGTAAAAAGAAATATTGGAGAAAAAATAAAATCTGCAAGACTTCAACAGAATCTTACAAGGGAAGTTGTATG
TAATGATGAGTCTGAAATTACTATAAGACAACTAGCAAGAATTGAGTCAGGTGAATCATTACCAACATTACCCAAATTAA
GGTTTTTAGCAAAAAAGTTAAATATATATATCTATAAGCTATTTGATTGA
ATGTGTAATGTAAAAAGAAATATTGGAGAAAAAATAAAATCTGCAAGACTTCAACAGAATCTTACAAGGGAAGTTGTATG
TAATGATGAGTCTGAAATTACTATAAGACAACTAGCAAGAATTGAGTCAGGTGAATCATTACCAACATTACCCAAATTAA
GGTTTTTAGCAAAAAAGTTAAATATATATATCTATAAGCTATTTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comR | Streptococcus salivarius SK126 |
50 |
98.551 |
0.493 |
| comR | Streptococcus salivarius strain HSISS4 |
50 |
98.551 |
0.493 |
| comR | Streptococcus thermophilus LMG 18311 |
48.529 |
98.551 |
0.478 |
| comR | Streptococcus thermophilus LMD-9 |
48.529 |
98.551 |
0.478 |
| comR | Streptococcus mutans UA159 |
50 |
92.754 |
0.464 |
| comR | Streptococcus pyogenes MGAS315 |
49.206 |
91.304 |
0.449 |
| comR | Streptococcus pyogenes MGAS8232 |
49.206 |
91.304 |
0.449 |
| comR/comR1 | Streptococcus sobrinus strain NIDR 6715-7 |
45.902 |
88.406 |
0.406 |