Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M1J35_RS12600 Genome accession   NZ_CP096886
Coordinates   2466277..2467512 (+) Length   411 a.a.
NCBI ID   WP_254651350.1    Uniprot ID   -
Organism   Rossellomorea sp. KS-H15a     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 2461277..2472512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1J35_RS12575 (M1J35_12575) ymfI 2462541..2463257 (+) 717 WP_254651348.1 elongation factor P 5-aminopentanone reductase -
  M1J35_RS12580 (M1J35_12580) - 2463346..2463603 (+) 258 WP_034760081.1 DUF3243 domain-containing protein -
  M1J35_RS12585 (M1J35_12585) - 2463835..2464626 (+) 792 WP_034760078.1 DUF3388 domain-containing protein -
  M1J35_RS12590 (M1J35_12590) - 2464646..2465545 (+) 900 WP_224520231.1 helix-turn-helix domain-containing protein -
  M1J35_RS12595 (M1J35_12595) pgsA 2465627..2466205 (+) 579 WP_254651349.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M1J35_RS12600 (M1J35_12600) cinA 2466277..2467512 (+) 1236 WP_254651350.1 competence/damage-inducible protein A Machinery gene
  M1J35_RS12605 (M1J35_12605) recA 2467710..2468747 (+) 1038 WP_034760069.1 recombinase RecA Machinery gene
  M1J35_RS12610 (M1J35_12610) rny 2469193..2470752 (+) 1560 WP_034760066.1 ribonuclease Y -
  M1J35_RS12615 (M1J35_12615) - 2470917..2471720 (+) 804 WP_254651351.1 TIGR00282 family metallophosphoesterase -
  M1J35_RS12620 (M1J35_12620) spoVS 2471857..2472117 (+) 261 WP_034760060.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 411 a.a.        Molecular weight: 44950.34 Da        Isoelectric Point: 6.1933

>NTDB_id=684819 M1J35_RS12600 WP_254651350.1 2466277..2467512(+) (cinA) [Rossellomorea sp. KS-H15a]
MNAEIIAVGSELLLGQIVNSNAQFISEQLAEMGVNVYYHTSVGDNPARLQQVIEVAKKRADILIFTGGLGPTKDDLTKET
IAHALGTNLSMDHDALESIKGYFQKVNREMTPNNEKQALILSGAHVLKNEHGMAPGMLLKKDGNAYMLLPGPPSEMRPMF
DKHGKQAILNLMKKKEVIHSRVLRFFGIGEAELETELEDLIDRQTNPTIAPLAGDGEVTLRLTAKHESRDIAVSLLDSVE
EKILNRVGEYFYGYNQDSLVEVGVHLLKEKGLTLSCAESLTGGLFQAQLTSIPGASDVLSGGVICYQDEIKKRILSVNDR
TLKQHSAVSEQCARELAENVRELFSTDIGISFTGVAGPDAHEGHPAGTVWIGLSMKDGTTKAYLLNLGGGRNGNRMRTAK
YGWHYLIKELS

Nucleotide


Download         Length: 1236 bp        

>NTDB_id=684819 M1J35_RS12600 WP_254651350.1 2466277..2467512(+) (cinA) [Rossellomorea sp. KS-H15a]
ATGAATGCAGAAATAATAGCGGTTGGGTCCGAATTATTGCTCGGACAAATCGTCAATTCCAATGCTCAATTCATTTCCGA
ACAGTTGGCTGAGATGGGAGTGAACGTGTATTATCACACAAGTGTGGGGGATAACCCTGCCCGTTTACAGCAGGTCATTG
AGGTAGCAAAGAAGCGGGCGGACATATTGATCTTTACTGGAGGCCTTGGACCCACAAAGGATGATCTGACGAAAGAAACG
ATCGCCCATGCTTTAGGAACGAATTTAAGCATGGATCATGACGCATTGGAATCGATAAAAGGCTATTTTCAGAAGGTCAA
TCGTGAAATGACTCCCAATAATGAAAAACAAGCCCTCATATTATCCGGGGCCCATGTATTGAAGAACGAACACGGCATGG
CTCCGGGGATGCTGTTGAAAAAGGACGGGAATGCCTATATGCTTCTCCCCGGTCCGCCGTCTGAAATGAGGCCGATGTTC
GATAAGCACGGCAAACAGGCAATCCTGAACTTGATGAAGAAGAAAGAAGTCATCCATTCACGGGTACTTCGTTTCTTTGG
CATCGGGGAAGCAGAGCTCGAAACGGAATTAGAAGATCTGATCGACAGGCAAACCAATCCGACTATCGCCCCTCTCGCTG
GTGACGGGGAAGTGACCTTGAGGCTTACGGCTAAGCACGAGTCAAGGGATATTGCCGTGTCATTATTGGATTCGGTTGAA
GAAAAGATCTTGAACAGGGTGGGGGAATATTTCTACGGTTATAATCAGGATTCCCTTGTTGAAGTGGGGGTCCATTTATT
AAAAGAGAAGGGACTTACCCTATCATGCGCAGAAAGTTTGACTGGTGGACTGTTTCAGGCTCAACTGACGTCTATTCCCG
GGGCATCGGACGTTTTGAGCGGCGGGGTGATCTGCTATCAGGATGAGATCAAGAAAAGGATTTTATCTGTTAATGACCGT
ACACTGAAACAGCATTCAGCAGTCAGTGAGCAATGTGCACGGGAACTGGCTGAAAACGTTAGAGAGCTGTTTTCCACTGA
CATAGGGATCAGCTTTACAGGTGTAGCAGGACCCGACGCTCACGAAGGTCATCCTGCAGGGACCGTCTGGATTGGATTAT
CTATGAAGGATGGAACGACCAAGGCATATCTATTAAACCTTGGCGGTGGCCGGAATGGGAACCGGATGAGGACGGCGAAG
TATGGTTGGCACTATTTAATTAAAGAACTGAGTTAG

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-165)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

58.824

99.27

0.584
  cinA Streptococcus mutans UA159

50.125

97.567

0.489
  cinA Streptococcus mitis SK321

50.251

96.837

0.487
  cinA Streptococcus mitis NCTC 12261

49.749

96.837

0.482
  cinA Streptococcus pneumoniae TIGR4

48.995

96.837

0.474
  cinA Streptococcus pneumoniae Rx1

48.744

96.837

0.472
  cinA Streptococcus pneumoniae R6

48.744

96.837

0.472
  cinA Streptococcus pneumoniae D39

48.492

96.837

0.47
  cinA Streptococcus suis isolate S10

41.119

100

0.411