Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   M1V28_RS24730 Genome accession   NZ_CP096822
Coordinates   5354593..5355810 (+) Length   405 a.a.
NCBI ID   WP_010792214.1    Uniprot ID   A0A643EEA0
Organism   Pseudomonas aeruginosa strain NY8709     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 5334611..5355810 5354593..5355810 within 0


Gene organization within MGE regions


Location: 5334611..5355810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1V28_RS24585 (M1V28_24545) - 5334611..5335327 (-) 717 WP_073624880.1 hypothetical protein -
  M1V28_RS24590 (M1V28_24550) - 5335476..5335676 (+) 201 WP_023435053.1 helix-turn-helix domain-containing protein -
  M1V28_RS24595 (M1V28_24555) - 5335673..5336089 (+) 417 WP_023435054.1 hypothetical protein -
  M1V28_RS24600 (M1V28_24560) - 5336082..5336315 (+) 234 WP_023110507.1 hypothetical protein -
  M1V28_RS24605 (M1V28_24565) - 5336312..5336560 (+) 249 WP_023435055.1 hypothetical protein -
  M1V28_RS24610 (M1V28_24570) - 5336557..5336862 (+) 306 WP_023109345.1 hypothetical protein -
  M1V28_RS32965 - 5336865..5337302 (+) 438 WP_305954514.1 hypothetical protein -
  M1V28_RS24620 (M1V28_24580) - 5337341..5337808 (+) 468 WP_031285502.1 hypothetical protein -
  M1V28_RS24625 (M1V28_24585) - 5337815..5338768 (+) 954 WP_306279704.1 DUF3631 domain-containing protein -
  M1V28_RS24630 (M1V28_24590) - 5338768..5339061 (+) 294 WP_023435057.1 hypothetical protein -
  M1V28_RS24635 (M1V28_24595) - 5339117..5340019 (+) 903 WP_023435058.1 hypothetical protein -
  M1V28_RS24640 (M1V28_24600) - 5340943..5341107 (+) 165 WP_153519866.1 hypothetical protein -
  M1V28_RS24645 (M1V28_24605) - 5341124..5342716 (+) 1593 WP_079383750.1 anti-phage dCTP deaminase -
  M1V28_RS24650 (M1V28_24610) - 5343438..5343944 (-) 507 WP_003096122.1 GNAT family N-acetyltransferase -
  M1V28_RS24655 (M1V28_24615) - 5344404..5344646 (-) 243 WP_003096120.1 hypothetical protein -
  M1V28_RS24660 (M1V28_24620) - 5344697..5344966 (+) 270 WP_073646154.1 hypothetical protein -
  M1V28_RS24665 (M1V28_24625) - 5344966..5345202 (+) 237 WP_003096116.1 hypothetical protein -
  M1V28_RS24670 (M1V28_24630) - 5345409..5345690 (-) 282 WP_023435065.1 hypothetical protein -
  M1V28_RS24675 (M1V28_24635) - 5345887..5346585 (+) 699 WP_124014670.1 hypothetical protein -
  M1V28_RS24680 (M1V28_24640) - 5346610..5347614 (+) 1005 WP_031689993.1 pesticin C-terminus-like muramidase -
  M1V28_RS24685 (M1V28_24645) - 5347627..5348289 (+) 663 WP_033992423.1 DUF3218 family protein -
  M1V28_RS24690 (M1V28_24650) fliP 5348569..5349324 (+) 756 WP_031285507.1 flagellar type III secretion system pore protein FliP -
  M1V28_RS24695 (M1V28_24655) fliQ 5349369..5349638 (+) 270 WP_023435365.1 flagellar biosynthesis protein FliQ -
  M1V28_RS24700 (M1V28_24660) fliR 5349638..5350420 (+) 783 Protein_4893 flagellar biosynthetic protein FliR -
  M1V28_RS24705 (M1V28_24665) - 5350423..5350682 (+) 260 Protein_4894 EscU/YscU/HrcU family type III secretion system export apparatus switch protein -
  M1V28_RS24710 (M1V28_24670) - 5351712..5351954 (+) 243 WP_023082027.1 hypothetical protein -
  M1V28_RS24720 (M1V28_24680) - 5352185..5352658 (-) 474 WP_015503553.1 pilin -
  M1V28_RS24725 (M1V28_24685) pilB 5352889..5354589 (+) 1701 WP_003120945.1 type IV-A pilus assembly ATPase PilB Machinery gene
  M1V28_RS24730 (M1V28_24690) pilC 5354593..5355810 (+) 1218 WP_010792214.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44242.19 Da        Isoelectric Point: 9.8988

>NTDB_id=684485 M1V28_RS24730 WP_010792214.1 5354593..5355810(+) (pilC) [Pseudomonas aeruginosa strain NY8709]
MADKALKTCVFVWEGTDKKGAKVKGELAGQNTMLVKAQLRKQGINPLKVRKKGITLLGKGKRVKPMDIALFTRQMATMMG
AGVPLLQSFDIISEGFDNPNMRKLVDEIKQEVSAGNSLANSLRKKPLYFDDLYCNLVDAGEQSGALETLLDRVATYKEKT
ESLKAKIKKAMTYPIAVVLVAIIVSAILLIKVVPQFQSVFSSFGAELPAFTMMVINLSNLLQEWWLVVLIGLFSASFAIK
ESHKRSVNFRNTVDRYMLKIPIIGGILYKSAVARYARTLSTTFAAGVPLVEALDSVSGATGNVVFRNAVSKIKQDVSTGM
QLNFSMRTTNVFPNMAIQMTAIGEESGSLDDMLGKVAAFYEEEVDNAVDNLTTLMEPMIMAVLGVLVGGLIIAMYLPIFQ
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=684485 M1V28_RS24730 WP_010792214.1 5354593..5355810(+) (pilC) [Pseudomonas aeruginosa strain NY8709]
ATGGCGGATAAAGCGTTAAAAACCTGTGTTTTCGTCTGGGAAGGCACGGACAAGAAAGGGGCAAAGGTCAAGGGGGAGTT
GGCTGGCCAGAACACTATGCTGGTGAAGGCGCAACTGCGCAAACAGGGCATAAATCCGCTCAAGGTCAGAAAAAAGGGCA
TTACCCTTCTCGGCAAGGGAAAGCGCGTAAAGCCGATGGACATCGCACTATTTACTCGTCAGATGGCAACCATGATGGGT
GCTGGGGTTCCTCTCTTGCAATCGTTCGACATAATTTCCGAAGGTTTCGACAATCCCAACATGCGTAAGCTGGTCGACGA
GATCAAACAAGAGGTCTCGGCGGGTAACAGCCTGGCAAACTCCTTGCGAAAGAAACCTCTTTATTTTGACGATCTCTATT
GCAACCTGGTGGATGCAGGTGAACAATCTGGCGCCTTGGAGACTTTGCTTGACCGTGTTGCCACCTATAAGGAAAAAACC
GAATCGCTAAAAGCCAAGATAAAAAAGGCTATGACATACCCCATTGCCGTCGTCTTGGTCGCGATCATTGTTTCAGCCAT
TCTCCTGATCAAGGTCGTACCCCAGTTCCAATCCGTTTTCTCCAGTTTCGGAGCGGAACTACCAGCCTTTACAATGATGG
TGATAAACCTGTCAAATCTTTTACAGGAATGGTGGCTAGTCGTCCTCATCGGATTATTCAGCGCCAGCTTCGCCATCAAG
GAATCGCATAAGCGTTCAGTAAATTTCCGTAACACGGTAGACCGCTATATGTTGAAAATACCGATAATCGGAGGAATACT
TTACAAATCAGCCGTGGCACGTTACGCCCGTACACTTTCAACAACTTTCGCCGCAGGTGTTCCATTGGTGGAGGCACTAG
ACTCTGTCTCTGGAGCGACAGGAAACGTGGTATTCCGCAACGCGGTAAGCAAGATCAAACAGGATGTATCCACAGGTATG
CAATTGAACTTCTCCATGAGAACGACCAATGTATTCCCCAACATGGCAATCCAGATGACAGCCATCGGTGAGGAATCCGG
TTCTCTGGACGACATGTTGGGCAAGGTGGCTGCGTTCTATGAGGAGGAAGTAGACAATGCCGTCGACAATCTGACAACTC
TCATGGAACCTATGATCATGGCCGTGCTCGGCGTACTGGTCGGCGGCCTGATCATCGCTATGTATCTACCGATCTTCCAA
CTGGGTTCCGTTGTGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(276-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A643EEA0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

78.765

100

0.788
  pilC Acinetobacter baumannii D1279779

58.911

99.753

0.588
  pilC Acinetobacter baylyi ADP1

59.045

98.272

0.58
  pilC Legionella pneumophila strain ERS1305867

54.293

97.778

0.531
  pilG Neisseria meningitidis 44/76-A

44.03

99.259

0.437
  pilG Neisseria gonorrhoeae MS11

43.781

99.259

0.435
  pilC Vibrio cholerae strain A1552

43.21

100

0.432
  pilC Vibrio campbellii strain DS40M4

43.182

97.778

0.422
  pilC Thermus thermophilus HB27

37.406

99.012

0.37