Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OLL86_RS00180 Genome accession   NZ_CP110225
Coordinates   38420..39007 (-) Length   195 a.a.
NCBI ID   WP_013745609.1    Uniprot ID   A0A0A2YPL6
Organism   Gallibacterium anatis strain IMT49310     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 33420..44007
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OLL86_RS00160 (OLL86_00160) fruB 33809..34969 (-) 1161 WP_264780063.1 fused PTS fructose transporter subunit IIA/HPr protein -
  OLL86_RS00165 (OLL86_00165) - 35189..36490 (-) 1302 WP_264780064.1 anaerobic C4-dicarboxylate transporter -
  OLL86_RS00170 (OLL86_00170) - 36621..37019 (-) 399 WP_013745611.1 YbaN family protein -
  OLL86_RS00175 (OLL86_00175) clpX 37161..38408 (-) 1248 WP_264780065.1 ATP-dependent protease ATP-binding subunit ClpX Regulator
  OLL86_RS00180 (OLL86_00180) clpP 38420..39007 (-) 588 WP_013745609.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  OLL86_RS00185 (OLL86_00185) tig 39148..40449 (-) 1302 WP_018345830.1 trigger factor -
  OLL86_RS00190 (OLL86_00190) - 40787..41602 (+) 816 WP_039087707.1 NAD-dependent dehydratase -
  OLL86_RS00220 (OLL86_00220) nagA 42378..43523 (-) 1146 WP_264780066.1 N-acetylglucosamine-6-phosphate deacetylase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21658.95 Da        Isoelectric Point: 5.2660

>NTDB_id=683565 OLL86_RS00180 WP_013745609.1 38420..39007(-) (clpP) [Gallibacterium anatis strain IMT49310]
MALVPMVVEQTARGERAFDIYSRLLKERVIFLNGQVEDNMANLIVAQLLFLEAENPDEDINLYINSPGGVVTAGMAIYDT
MQFIKPDVRTLCMGQACSMGAFLLAGGAAGKRFALPHARIMIHQPLGGYRGQASDIQIHAQEILKIKDTLNQRLAFHTGQ
PLEVVERDTDRDNFMSAQAAKEYGLIDEVLTHRQL

Nucleotide


Download         Length: 588 bp        

>NTDB_id=683565 OLL86_RS00180 WP_013745609.1 38420..39007(-) (clpP) [Gallibacterium anatis strain IMT49310]
ATGGCATTAGTCCCAATGGTTGTCGAACAAACTGCTCGTGGTGAACGTGCTTTCGATATTTATTCTCGCTTACTGAAAGA
ACGTGTTATTTTTCTTAATGGGCAAGTTGAAGACAATATGGCCAACTTAATCGTTGCTCAATTGCTATTCCTTGAAGCGG
AAAACCCGGATGAAGATATTAATCTTTATATCAATTCTCCCGGCGGCGTTGTCACTGCCGGTATGGCAATTTACGATACA
ATGCAATTTATCAAACCTGATGTACGTACTCTTTGTATGGGGCAGGCTTGTTCTATGGGCGCATTTTTATTGGCAGGCGG
TGCAGCCGGAAAACGTTTTGCACTTCCACACGCTCGCATAATGATTCACCAACCTTTAGGCGGATATCGTGGTCAAGCTT
CGGATATTCAGATTCACGCACAGGAAATCCTTAAAATCAAAGATACTTTAAATCAACGTCTTGCTTTTCATACAGGTCAA
CCATTGGAAGTTGTCGAACGCGATACTGATCGTGATAACTTTATGTCTGCCCAAGCCGCTAAAGAATATGGTTTAATTGA
TGAAGTATTAACTCATCGCCAACTATAA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(13-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A2YPL6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

67.01

99.487

0.667
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.957

96.41

0.636
  clpP Streptococcus thermophilus LMG 18311

55.897

100

0.559
  clpP Streptococcus thermophilus LMD-9

55.897

100

0.559
  clpP Streptococcus pneumoniae R6

54.872

100

0.549
  clpP Streptococcus pneumoniae Rx1

54.872

100

0.549
  clpP Streptococcus pneumoniae D39

54.872

100

0.549
  clpP Streptococcus pneumoniae TIGR4

54.872

100

0.549
  clpP Lactococcus lactis subsp. cremoris KW2

52.821

100

0.528
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

52.308

100

0.523
  clpP Streptococcus mutans UA159

51.531

100

0.518
  clpP Streptococcus pyogenes JRS4

50.769

100

0.508
  clpP Streptococcus pyogenes MGAS315

50.769

100

0.508