Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SNAG_RS01665 Genome accession   NZ_AP017652
Coordinates   291901..293880 (+) Length   659 a.a.
NCBI ID   WP_096406000.1    Uniprot ID   A0A1E1G8X5
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 286901..298880
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01635 - 287385..287615 (+) 231 WP_009444432.1 DUF1146 family protein -
  SNAG_RS01640 (SNAG_0328) murA 287639..288922 (+) 1284 WP_096405995.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SNAG_RS01645 (SNAG_0329) - 288909..289103 (+) 195 WP_000739700.1 DNA-directed RNA polymerase subunit beta -
  SNAG_RS01650 (SNAG_0330) endA 289144..289968 (+) 825 WP_096405997.1 DNA/RNA non-specific endonuclease Machinery gene
  SNAG_RS01655 (SNAG_0331) - 290109..291440 (+) 1332 WP_096405998.1 hemolysin family protein -
  SNAG_RS01665 (SNAG_0333) amiA 291901..293880 (+) 1980 WP_096406000.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS01670 (SNAG_0334) amiC 293947..295443 (+) 1497 WP_096406001.1 ABC transporter permease Regulator
  SNAG_RS01675 (SNAG_0335) amiD 295443..296369 (+) 927 WP_033629311.1 oligopeptide ABC transporter permease OppC Regulator
  SNAG_RS01680 (SNAG_0336) amiE 296378..297445 (+) 1068 WP_033629312.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS01685 (SNAG_0337) amiF 297456..298385 (+) 930 WP_096406003.1 ATP-binding cassette domain-containing protein Regulator

Sequence

Protein


Download         Length: 659 a.a.        Molecular weight: 72908.87 Da        Isoelectric Point: 4.7627

>NTDB_id=68332 SNAG_RS01665 WP_096406000.1 291901..293880(+) (amiA) [Streptococcus sp. NPS 308]
MKKSRVFVAAGIALLATGVLAACGSSKSSDSTAPKNYGYVYSADPETLDYLISGKQSTKIATSNGIDGLFTNDKYGNLVP
AVAEDWSVSKDGLTYTYKIRKGVKWFTSDGEEYAEVTAKDFVNGLKHAADNKSEALYLAENSVKGLSDYLAGNTKDFSSV
GVKAVDDYTLEYTLNQPEPYWNSKMAYSIFWPLNEEFEKSKGSDFAKATDPTSLLYNGPFLLKGLTAKSSIEFAKNENYW
DKDNVHIDKVTLAYYDGSDQESIERNFTSGAYSYARLYPTSSNYSKVEETYKENIFYTPSGPGIGGLGVNIDRQGYKYTS
KTTDEEKTSTKKALLNKDFRQALNFAFDRTSYSAQVNGKEGAPRAVRNLFVKPDFVSAGEKTFGDLVTDKMSAYGDEWKN
VNFADGQDGLFNADKAKAEFAKAKTALEAEGVKFPIHLDVPVDQTAKNYIARIQSFKQSVETVLGEDNVVIDIQQVSKDE
FTNITYYAANAAAEDWDLSGAVGWNPDYEDPSTYLDILKTTNAEQTKTYMGYEGADNAAAAQVGLKEYDKLVDEAAKETS
DLNVRYEKYAAAQAWLTDSSLILPAMSSTGAAPFISRVVPFSASYSQSGDKGSDVYFKYIQLQDKVVTKADYEQAREKWL
KEKKESNEKVQKELANHVK

Nucleotide


Download         Length: 1980 bp        

>NTDB_id=68332 SNAG_RS01665 WP_096406000.1 291901..293880(+) (amiA) [Streptococcus sp. NPS 308]
ATGAAAAAAAGTAGAGTATTTGTCGCAGCAGGAATTGCCCTATTAGCAACTGGCGTTTTAGCTGCTTGTGGTTCTTCAAA
ATCATCTGATTCAACAGCGCCAAAAAATTATGGTTATGTTTATTCAGCTGACCCAGAAACATTGGATTACTTGATCTCAG
GGAAACAAAGTACTAAGATTGCCACTTCAAATGGTATCGATGGTCTCTTCACAAATGACAAGTATGGGAACCTAGTTCCT
GCAGTTGCAGAAGACTGGTCCGTTTCAAAAGACGGTTTGACTTATACTTACAAGATTCGTAAAGGAGTCAAATGGTTCAC
ATCTGACGGAGAAGAGTATGCAGAAGTTACTGCTAAGGACTTTGTGAATGGTTTGAAACACGCAGCTGATAACAAGTCAG
AAGCTCTTTACCTAGCAGAAAATTCTGTTAAAGGATTGTCTGATTATTTGGCAGGTAATACAAAAGACTTTTCTTCAGTA
GGTGTGAAAGCAGTTGATGATTATACTCTTGAGTATACTTTGAACCAACCAGAACCATACTGGAACTCTAAGATGGCTTA
TTCAATCTTCTGGCCATTGAACGAAGAATTTGAAAAATCAAAAGGATCTGACTTTGCTAAAGCGACTGACCCTACATCAT
TGCTTTACAATGGACCATTCTTGCTGAAAGGTTTGACTGCTAAGTCTTCTATCGAGTTCGCTAAGAATGAAAACTACTGG
GACAAAGATAATGTTCATATTGATAAAGTAACACTTGCTTACTATGATGGTTCAGACCAAGAGTCTATTGAACGTAACTT
TACAAGTGGAGCTTATAGCTATGCCCGTCTTTACCCAACAAGTTCAAACTACTCTAAAGTAGAAGAAACCTACAAGGAAA
ATATCTTCTACACCCCATCAGGACCTGGTATTGGTGGTTTGGGTGTGAATATTGACCGCCAAGGTTACAAATACACTTCT
AAGACAACTGATGAAGAGAAGACTTCTACTAAGAAAGCCCTTCTTAATAAGGACTTCCGTCAAGCCTTGAACTTTGCCTT
TGACCGTACGTCTTACTCAGCTCAAGTAAATGGTAAAGAAGGTGCTCCTCGTGCCGTTCGTAACCTCTTTGTAAAACCTG
ACTTTGTCTCTGCTGGCGAAAAAACTTTTGGTGACTTGGTGACTGATAAGATGTCAGCTTACGGTGATGAATGGAAGAAC
GTAAACTTTGCGGATGGTCAAGATGGACTCTTCAACGCCGATAAAGCCAAAGCTGAATTTGCCAAAGCCAAAACAGCATT
GGAAGCAGAAGGTGTAAAATTCCCTATCCATTTGGATGTTCCAGTAGACCAAACAGCTAAAAACTATATCGCACGTATTC
AATCCTTCAAACAATCCGTTGAAACAGTGCTTGGAGAAGACAATGTAGTCATCGATATCCAACAAGTTTCTAAAGATGAG
TTTACTAATATTACCTACTATGCGGCGAATGCAGCAGCAGAAGACTGGGATCTCTCAGGGGCAGTTGGATGGAACCCAGA
CTATGAAGATCCATCAACTTACCTTGACATCTTGAAGACAACGAATGCTGAACAAACAAAAACATACATGGGTTACGAAG
GTGCAGATAATGCTGCAGCAGCTCAAGTTGGTTTGAAAGAATACGATAAGCTAGTTGATGAAGCTGCTAAAGAAACAAGC
GACTTGAATGTTCGTTATGAAAAATACGCTGCTGCCCAAGCTTGGTTGACAGATAGCTCACTCATCTTGCCAGCTATGTC
ATCAACTGGTGCTGCACCATTCATTTCTCGTGTTGTGCCATTCTCTGCATCTTACAGTCAATCTGGAGACAAGGGATCAG
ACGTATACTTCAAGTATATTCAGTTACAAGATAAGGTTGTAACAAAAGCTGACTATGAACAAGCTCGTGAAAAATGGCTC
AAAGAGAAAAAAGAATCAAACGAAAAAGTTCAAAAAGAATTGGCTAACCACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(78-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1G8X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

67.83

100

0.678
  amiA3 Streptococcus thermophilus LMD-9

67.273

100

0.674
  amiA3 Streptococcus thermophilus LMG 18311

67.121

100

0.672

Multiple sequence alignment