Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SNAG_RS01650 Genome accession   NZ_AP017652
Coordinates   289144..289968 (+) Length   274 a.a.
NCBI ID   WP_096405997.1    Uniprot ID   -
Organism   Streptococcus sp. NPS 308     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 284144..294968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01615 (SNAG_0324) asnA 284234..285226 (+) 993 WP_061852938.1 aspartate--ammonia ligase -
  SNAG_RS01620 (SNAG_0325) rsmD 285291..285830 (+) 540 WP_096405992.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  SNAG_RS01625 (SNAG_0326) coaD 285820..286308 (+) 489 WP_096405994.1 pantetheine-phosphate adenylyltransferase -
  SNAG_RS01630 (SNAG_0327) sepM 286292..287329 (+) 1038 WP_057489243.1 SepM family pheromone-processing serine protease Regulator
  SNAG_RS01635 - 287385..287615 (+) 231 WP_009444432.1 DUF1146 family protein -
  SNAG_RS01640 (SNAG_0328) murA 287639..288922 (+) 1284 WP_096405995.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SNAG_RS01645 (SNAG_0329) - 288909..289103 (+) 195 WP_000739700.1 DNA-directed RNA polymerase subunit beta -
  SNAG_RS01650 (SNAG_0330) endA 289144..289968 (+) 825 WP_096405997.1 DNA/RNA non-specific endonuclease Machinery gene
  SNAG_RS01655 (SNAG_0331) - 290109..291440 (+) 1332 WP_096405998.1 hemolysin family protein -
  SNAG_RS01665 (SNAG_0333) amiA 291901..293880 (+) 1980 WP_096406000.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 274 a.a.        Molecular weight: 29970.62 Da        Isoelectric Point: 9.9134

>NTDB_id=68331 SNAG_RS01650 WP_096405997.1 289144..289968(+) (endA) [Streptococcus sp. NPS 308]
MDKKTRQALIGLLIFLLLSAGSYYIKQMQTAPNTPKTKVSQKRQASEAPSQELAESVLTESIKNQIKGGLEWNGAGAFVV
NGNKTNLDAKVSSKPYADNKTKPVGKETVPTVANAILSKATRQYKNREETGNGSTSWTPPGWHQVKNLKGTYTHAVDRGH
LLGYALIGGLDGFDASTSNPKNIAVQTAWANQAQAEDSTGQNYYESLVRKALDQNKRVRYRVTLHYATNEDLVPSASQIE
AKSSDGELEFNVLIPNVQKGIQLDYRTGQVTVTN

Nucleotide


Download         Length: 825 bp        

>NTDB_id=68331 SNAG_RS01650 WP_096405997.1 289144..289968(+) (endA) [Streptococcus sp. NPS 308]
ATGGACAAGAAAACAAGACAAGCTCTGATAGGGCTACTCATATTCTTACTATTATCTGCTGGTAGTTATTACATCAAGCA
GATGCAGACAGCGCCAAACACCCCTAAAACTAAGGTTAGCCAGAAAAGACAAGCTTCAGAAGCTCCTAGTCAGGAGTTGG
CAGAAAGTGTCTTAACTGAGTCGATCAAGAACCAAATAAAAGGTGGTCTAGAATGGAATGGGGCAGGTGCCTTTGTCGTA
AATGGCAATAAAACCAATCTAGATGCTAAAGTTTCTAGCAAACCCTATGCGGATAATAAAACAAAACCAGTCGGGAAAGA
GACCGTCCCAACGGTTGCCAATGCCATCTTATCCAAAGCGACTCGGCAGTATAAAAATCGTGAAGAAACAGGCAACGGCT
CAACCTCTTGGACACCGCCGGGATGGCATCAGGTTAAAAATTTAAAGGGAACCTATACGCACGCAGTAGATAGGGGGCAC
TTGTTGGGTTATGCCTTGATAGGTGGATTAGATGGCTTTGATGCTTCTACCAGCAATCCCAAGAACATTGCAGTTCAGAC
AGCTTGGGCCAACCAGGCTCAGGCGGAAGATTCGACAGGGCAGAACTACTATGAGAGTCTGGTTAGGAAAGCCTTAGACC
AGAATAAGAGAGTCCGTTATCGGGTAACTCTCCACTATGCTACGAATGAGGATTTGGTTCCATCTGCTTCACAAATTGAA
GCCAAGTCTTCGGATGGTGAATTGGAGTTCAACGTCCTGATTCCAAATGTTCAAAAGGGTATCCAGCTTGATTACCGAAC
AGGTCAGGTCACGGTGACAAATTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(76-273)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

89.011

99.635

0.887
  endA Streptococcus pneumoniae D39

89.011

99.635

0.887
  endA Streptococcus pneumoniae R6

89.011

99.635

0.887
  endA Streptococcus pneumoniae TIGR4

89.011

99.635

0.887

Multiple sequence alignment