Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   SNAG_RS01670 Genome accession   NZ_AP017652
Coordinates   293947..295443 (+) Length   498 a.a.
NCBI ID   WP_096406001.1    Uniprot ID   A0A1E1G8Z3
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 288947..300443
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01650 (SNAG_0330) endA 289144..289968 (+) 825 WP_096405997.1 DNA/RNA non-specific endonuclease Machinery gene
  SNAG_RS01655 (SNAG_0331) - 290109..291440 (+) 1332 WP_096405998.1 hemolysin family protein -
  SNAG_RS01665 (SNAG_0333) amiA 291901..293880 (+) 1980 WP_096406000.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS01670 (SNAG_0334) amiC 293947..295443 (+) 1497 WP_096406001.1 ABC transporter permease Regulator
  SNAG_RS01675 (SNAG_0335) amiD 295443..296369 (+) 927 WP_033629311.1 oligopeptide ABC transporter permease OppC Regulator
  SNAG_RS01680 (SNAG_0336) amiE 296378..297445 (+) 1068 WP_033629312.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS01685 (SNAG_0337) amiF 297456..298385 (+) 930 WP_096406003.1 ATP-binding cassette domain-containing protein Regulator
  SNAG_RS09750 (SNAG_0338) - 298546..300231 (+) 1686 WP_157740108.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55716.09 Da        Isoelectric Point: 9.1164

>NTDB_id=68333 SNAG_RS01670 WP_096406001.1 293947..295443(+) (amiC) [Streptococcus sp. NPS 308]
MKKYIFMRVLRSLLSIFLVTTLTYTIIYTMVPRKLIFKQDTNYNKIATTPDKRDNYENTVYERMGYIEYYDTKELQEKAS
TIDSSVTVDANDTNKAIYEKYINQLGNGWTLGVFSESGQFYATREIPIFERVFKFYANLIDIDHTNKIQDPENPNLERYL
RFENDPAIGWSLVGSGTKHKYLLYFNNQFPFVHQNFVNVNLGDSYPTYANTPVLQVITQGQGQTKTSEVQFPTGKKTSSV
DIYSRTYKSPSQADAREVANYGKDDPYTATESNYQYPSMITSSAIAGLIGLIISYAIAIPLGSAMARHKNTWIDSFSTGA
LTFLLALPTIALVYIVRLIGSSIGLPDSFPILGAGDWRSYVLPAVILGLLGAPSTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAVIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSLFVGD
IWMTMLDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=68333 SNAG_RS01670 WP_096406001.1 293947..295443(+) (amiC) [Streptococcus sp. NPS 308]
ATGAAGAAATATATTTTTATGCGTGTATTGCGTTCATTGTTGTCTATTTTCTTGGTGACAACCTTGACCTACACAATTAT
CTATACGATGGTTCCTCGAAAATTGATTTTCAAGCAGGATACCAACTATAACAAGATTGCAACGACGCCGGACAAGCGGG
ATAATTATGAAAATACCGTTTATGAGCGGATGGGCTATATCGAGTACTACGATACCAAGGAGTTGCAAGAAAAAGCGAGC
ACGATAGACTCATCTGTAACAGTAGATGCCAATGATACCAATAAGGCAATCTACGAAAAATACATCAACCAACTAGGAAA
TGGTTGGACGCTAGGTGTATTCTCAGAAAGTGGTCAATTCTATGCTACGCGTGAAATTCCGATTTTTGAACGTGTTTTCA
AATTCTATGCCAACTTGATTGATATTGATCATACAAACAAGATTCAAGACCCTGAAAATCCAAACTTGGAACGTTATCTT
CGTTTTGAAAATGACCCTGCTATCGGTTGGTCATTGGTTGGTTCAGGTACAAAACATAAGTATCTTTTGTATTTCAACAA
CCAATTCCCATTTGTACACCAAAACTTTGTGAACGTTAACTTAGGTGATTCTTACCCAACTTATGCAAACACACCAGTGC
TTCAAGTTATCACACAGGGTCAAGGACAAACTAAGACATCAGAAGTTCAATTCCCTACAGGTAAAAAGACTTCATCTGTA
GATATCTACTCTCGTACCTACAAATCACCAAGTCAAGCAGACGCGCGTGAGGTAGCCAACTATGGTAAGGACGATCCATA
TACAGCTACAGAAAGCAATTACCAATACCCATCAATGATTACAAGTTCAGCGATTGCTGGTTTGATTGGTTTGATTATTT
CGTATGCTATCGCCATTCCTCTTGGTTCTGCTATGGCTCGCCACAAGAATACTTGGATTGATAGCTTCTCGACAGGTGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGTTTGATTGGATCATCTATTGGTCTACCAGA
CTCATTCCCTATCTTAGGTGCTGGAGATTGGCGTTCTTATGTCCTGCCGGCAGTCATTCTAGGTTTGTTGGGAGCACCAA
GTACGGCTATCTGGATTCGTCGTTACATGATCGACTTGCAATCTCAAGACTTCGTACGTTTTGCTCGCGCCAAAGGTTTG
TCTGAAAAAGAAATTTCAAATAAACACATCTTTAAAAATGCCATGGTTCCTTTGGTTTCAGGTATTCCTGGTGCTGTAAT
CGGAGTTATTGGTGGTGCAACATTGACAGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATCGACTCTGTTA
AGGCATCCAACAACTCAATGGTAGTTGGTCTCGTCTTCATCTTCACATGTATTTCTATCTTCTCACTCTTTGTAGGAGAT
ATCTGGATGACCATGCTTGATCCACGTATTAAATTGACAGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1G8Z3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.51

100

0.775
  amiC Streptococcus thermophilus LMG 18311

76.908

100

0.769
  amiC Streptococcus thermophilus LMD-9

76.707

100

0.767

Multiple sequence alignment