Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiF   Type   Regulator
Locus tag   SNAG_RS01685 Genome accession   NZ_AP017652
Coordinates   297456..298385 (+) Length   309 a.a.
NCBI ID   WP_096406003.1    Uniprot ID   A0A1E1G8Z0
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 292456..303385
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01670 (SNAG_0334) amiC 293947..295443 (+) 1497 WP_096406001.1 ABC transporter permease Regulator
  SNAG_RS01675 (SNAG_0335) amiD 295443..296369 (+) 927 WP_033629311.1 oligopeptide ABC transporter permease OppC Regulator
  SNAG_RS01680 (SNAG_0336) amiE 296378..297445 (+) 1068 WP_033629312.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS01685 (SNAG_0337) amiF 297456..298385 (+) 930 WP_096406003.1 ATP-binding cassette domain-containing protein Regulator
  SNAG_RS09750 (SNAG_0338) - 298546..300231 (+) 1686 WP_157740108.1 LPXTG cell wall anchor domain-containing protein -
  SNAG_RS01695 (SNAG_0339) - 300385..301824 (-) 1440 WP_096406004.1 TrkH family potassium uptake protein -
  SNAG_RS01700 (SNAG_0340) trkA 301828..303174 (-) 1347 WP_000706819.1 Trk system potassium transporter TrkA -

Sequence

Protein


Download         Length: 309 a.a.        Molecular weight: 35014.23 Da        Isoelectric Point: 6.8395

>NTDB_id=68336 SNAG_RS01685 WP_096406003.1 297456..298385(+) (amiF) [Streptococcus sp. NPS 308]
MSEKLVEIKDLEISFGEGSKKFVAVKNANFFINKGETFSLVGESGSGKTTIGRAIIGLNNTSKGEIIFDGHKINGKKSHK
ESSDLIRRIQMIFQDPAASLNERATVDYIISEGLYNYHLFKDEEDRKEKVQKMIHEVGLLKEHLTRYPHEFSGGQRQRIG
IARALVMEPDFVIADEPISALDVSVRAQVLNLLKKFQKELGLTYLFIAHDLSVVRFISDRIAVIYKGVIVEVAETEELFN
NPVHPYTQALLSAVPIPDPILERKKVLKVYDPDQHDYETDKPSMVEICPGHYVWANQAELARYKEALKK

Nucleotide


Download         Length: 930 bp        

>NTDB_id=68336 SNAG_RS01685 WP_096406003.1 297456..298385(+) (amiF) [Streptococcus sp. NPS 308]
ATGTCTGAAAAATTAGTAGAAATTAAAGATTTAGAAATTTCCTTCGGTGAAGGAAGTAAGAAGTTTGTCGCGGTTAAAAA
CGCCAACTTCTTTATCAACAAGGGAGAAACTTTCTCTCTTGTAGGAGAGTCTGGTAGTGGGAAAACAACGATTGGTCGTG
CTATTATTGGTCTAAATAATACCAGTAAAGGTGAAATCATCTTTGATGGTCATAAGATCAATGGAAAAAAATCTCATAAG
GAATCCTCAGACTTGATCCGTCGTATCCAGATGATTTTCCAGGACCCTGCAGCCAGCTTGAATGAGCGTGCGACGGTTGA
CTATATCATCTCTGAAGGTCTTTACAACTATCACTTGTTTAAAGATGAAGAAGACCGAAAAGAAAAAGTTCAAAAGATGA
TCCATGAAGTTGGGCTTTTGAAAGAACACCTGACCCGTTATCCACACGAGTTTTCTGGTGGTCAACGCCAGCGTATCGGG
ATTGCTCGTGCCCTTGTGATGGAACCTGATTTCGTTATTGCGGATGAGCCAATCTCTGCCTTGGACGTATCTGTTCGTGC
GCAAGTTTTGAACTTGCTCAAGAAGTTTCAAAAAGAGTTGGGCTTGACTTATCTCTTTATCGCCCATGACTTGTCAGTTG
TTCGCTTTATCTCAGATCGTATCGCAGTTATCTATAAGGGAGTTATCGTCGAAGTTGCGGAGACAGAGGAGTTGTTTAAC
AATCCTGTCCACCCATATACTCAGGCGCTTCTATCTGCTGTACCGATTCCAGATCCAATCTTGGAACGCAAGAAAGTCTT
GAAAGTTTACGACCCTGACCAACATGACTATGAGACAGACAAGCCATCTATGGTGGAAATTTGTCCAGGTCACTATGTTT
GGGCAAATCAAGCAGAACTTGCTCGTTACAAGGAAGCTCTTAAAAAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(25-178)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(230-262)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E1G8Z0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus salivarius strain HSISS4

84.79

100

0.848
  amiF Streptococcus thermophilus LMG 18311

83.819

100

0.838
  amiF Streptococcus thermophilus LMD-9

83.495

100

0.835

Multiple sequence alignment