Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   SNAG_RS01675 Genome accession   NZ_AP017652
Coordinates   295443..296369 (+) Length   308 a.a.
NCBI ID   WP_033629311.1    Uniprot ID   A0A0F2D1J2
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 290443..301369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01665 (SNAG_0333) amiA 291901..293880 (+) 1980 WP_096406000.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS01670 (SNAG_0334) amiC 293947..295443 (+) 1497 WP_096406001.1 ABC transporter permease Regulator
  SNAG_RS01675 (SNAG_0335) amiD 295443..296369 (+) 927 WP_033629311.1 oligopeptide ABC transporter permease OppC Regulator
  SNAG_RS01680 (SNAG_0336) amiE 296378..297445 (+) 1068 WP_033629312.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS01685 (SNAG_0337) amiF 297456..298385 (+) 930 WP_096406003.1 ATP-binding cassette domain-containing protein Regulator
  SNAG_RS09750 (SNAG_0338) - 298546..300231 (+) 1686 WP_157740108.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34574.64 Da        Isoelectric Point: 9.5397

>NTDB_id=68334 SNAG_RS01675 WP_033629311.1 295443..296369(+) (amiD) [Streptococcus sp. NPS 308]
MSTIGKEKFQFVKRDDFASETIDAPAYSYWGSVFRQFLKKKSTVIMLGILVAIILMSFIYPMFSNFDFNDVSKVNDFSAR
FIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATFINLVIGVIVGGIWGISKSVDRVMMEVYNIISNIPSLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAYMIRIQIMRYRDLEYNLASQTLGTPTFKIIVKNIMPQLVSVIVSTMTLMLPSFIS
YEAFLSFFGLGLPVTVPSLGRLISDYSQNVTTNAYLFWIPLTTLILVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=68334 SNAG_RS01675 WP_033629311.1 295443..296369(+) (amiD) [Streptococcus sp. NPS 308]
ATGTCAACAATCGGAAAAGAAAAATTTCAGTTCGTAAAACGTGACGATTTTGCCTCTGAAACAATTGACGCCCCTGCCTA
TTCATACTGGGGTTCTGTATTTAGACAATTTCTAAAGAAAAAATCAACAGTCATTATGTTGGGGATTTTGGTTGCCATTA
TCTTGATGAGCTTTATTTATCCAATGTTCTCAAACTTTGACTTCAACGATGTAAGTAAGGTCAATGACTTTTCTGCTCGT
TTTATCAAACCCAATGCTGAACATTGGTTTGGTACAGATAGTAATGGTAAATCCTTGTTTGACGGGGTTTGGTTTGGTGC
GCGTAATTCTATCCTTATCTCTGTAATTGCAACTTTTATCAACCTTGTAATTGGGGTTATTGTTGGTGGAATCTGGGGAA
TTTCAAAATCTGTTGACCGTGTCATGATGGAAGTTTATAACATTATTTCAAACATTCCATCTCTCTTGATTGTCATTGTC
TTGACTTACTCAATTGGTGCTGGTTTCTGGAATTTGATTTTTGCCATGAGTGTGACAACTTGGATTGGGATTGCTTATAT
GATTCGTATCCAAATCATGCGTTACCGTGACTTGGAATACAACCTTGCCTCTCAAACACTTGGAACACCAACCTTTAAAA
TCATCGTTAAAAACATCATGCCACAATTGGTATCTGTTATTGTTTCTACGATGACCTTGATGTTGCCAAGCTTCATCTCT
TATGAAGCCTTCCTTTCCTTCTTTGGATTGGGATTGCCTGTAACAGTGCCAAGTCTGGGACGTTTGATCTCAGATTACTC
ACAAAACGTTACGACCAACGCTTACTTGTTCTGGATTCCATTGACAACCCTGATCTTGGTGTCCCTATCTCTCTTCGTTG
TTGGTCAAAACCTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(123-306)

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2D1J2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.494

100

0.815
  amiD Streptococcus thermophilus LMD-9

81.494

100

0.815

Multiple sequence alignment