Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   SNAG_RS01680 Genome accession   NZ_AP017652
Coordinates   296378..297445 (+) Length   355 a.a.
NCBI ID   WP_033629312.1    Uniprot ID   A0A0F2D226
Organism   Streptococcus sp. NPS 308     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 291378..302445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SNAG_RS01665 (SNAG_0333) amiA 291901..293880 (+) 1980 WP_096406000.1 peptide ABC transporter substrate-binding protein Regulator
  SNAG_RS01670 (SNAG_0334) amiC 293947..295443 (+) 1497 WP_096406001.1 ABC transporter permease Regulator
  SNAG_RS01675 (SNAG_0335) amiD 295443..296369 (+) 927 WP_033629311.1 oligopeptide ABC transporter permease OppC Regulator
  SNAG_RS01680 (SNAG_0336) amiE 296378..297445 (+) 1068 WP_033629312.1 ABC transporter ATP-binding protein Regulator
  SNAG_RS01685 (SNAG_0337) amiF 297456..298385 (+) 930 WP_096406003.1 ATP-binding cassette domain-containing protein Regulator
  SNAG_RS09750 (SNAG_0338) - 298546..300231 (+) 1686 WP_157740108.1 LPXTG cell wall anchor domain-containing protein -
  SNAG_RS01695 (SNAG_0339) - 300385..301824 (-) 1440 WP_096406004.1 TrkH family potassium uptake protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 39529.13 Da        Isoelectric Point: 4.6453

>NTDB_id=68335 SNAG_RS01680 WP_033629312.1 296378..297445(+) (amiE) [Streptococcus sp. NPS 308]
MTKESNVILTARDIVVEFDVRDKVLTAIRGVSLDLIEGEVLALVGESGSGKSVLTKTFTGMLEDNGRIAQGSIDYRGQDL
TALTSNKEWEKIRGAKIATIFQDPMTSLDPINTIGSQITEVIVKHQGKTAKEAKEMAIDYMNKVGIPDAEKRFEEYPFQY
SGGMRQRIVIAIALACRPDILICDEPTTALDVTIQAQIIDLLKTLQNEYHFTIIFITHDLGVVASIADKVAVMYAGEIVE
YGTVEEVFYDPRHPYTWSLLSSLPQLADDKGELYSIPGTPPSLYTELKGDAFALRSDYAMQIDFEQKAPQFSVSDTHWAK
TWLLHENAPKVEKPGVIADLHDKIRDKMGFAHLED

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=68335 SNAG_RS01680 WP_033629312.1 296378..297445(+) (amiE) [Streptococcus sp. NPS 308]
ATGACAAAAGAAAGTAATGTAATTTTGACTGCTCGTGATATTGTCGTGGAATTTGACGTTCGTGACAAAGTTCTGACGGC
TATCCGAGGAGTGTCTCTGGACCTGATTGAAGGGGAAGTTCTTGCCCTGGTAGGTGAGTCAGGTTCTGGTAAATCTGTAT
TAACAAAAACCTTTACAGGGATGCTAGAAGACAATGGACGTATTGCCCAAGGAAGTATTGACTATCGTGGACAAGACTTG
ACAGCCTTGACTTCTAACAAGGAATGGGAGAAGATTCGTGGTGCTAAAATTGCGACCATCTTCCAAGACCCTATGACAAG
TTTGGACCCAATCAATACAATTGGTAGCCAAATCACTGAAGTTATCGTTAAACACCAAGGAAAAACAGCCAAGGAAGCCA
AAGAGATGGCAATCGACTATATGAACAAGGTCGGAATCCCAGATGCTGAAAAACGTTTTGAAGAGTATCCTTTCCAGTAT
TCTGGAGGGATGCGCCAACGTATCGTTATTGCGATTGCCCTTGCCTGTCGTCCAGATATCTTGATCTGTGACGAGCCGAC
AACGGCCCTTGATGTAACCATTCAAGCCCAAATCATTGATTTGCTTAAAACTTTACAGAACGAGTACCACTTTACCATTA
TCTTTATCACCCATGACCTTGGTGTGGTAGCAAGTATTGCGGATAAGGTAGCGGTTATGTATGCTGGTGAAATTGTAGAA
TACGGTACTGTTGAGGAAGTCTTCTACGATCCACGTCATCCATATACTTGGAGTCTCTTGTCTAGCTTGCCACAGCTTGC
TGATGATAAAGGGGAATTGTACTCTATCCCAGGAACACCACCGTCTCTTTATACTGAGTTGAAAGGTGATGCCTTTGCCC
TTCGTTCAGATTATGCTATGCAAATTGACTTTGAACAAAAAGCACCTCAGTTTTCAGTTAGTGATACCCACTGGGCTAAG
ACTTGGTTGCTTCATGAGAATGCTCCTAAAGTTGAAAAACCTGGGGTCATCGCAGATTTGCATGACAAGATTCGTGATAA
AATGGGCTTTGCTCATCTAGAAGACTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(29-187)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(239-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0F2D226

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

86.479

100

0.865
  amiE Streptococcus thermophilus LMG 18311

84.507

100

0.845
  amiE Streptococcus thermophilus LMD-9

84.507

100

0.845
  oppD Streptococcus mutans UA159

54.545

99.155

0.541

Multiple sequence alignment