Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   JMUB1235_RS00590 Genome accession   NZ_AP017629
Coordinates   95897..96835 (+) Length   312 a.a.
NCBI ID   WP_020904831.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain JMUB1235     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 90897..101835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JMUB1235_RS00580 (JMUB1235_0117) rpoC 91646..95287 (+) 3642 WP_031488660.1 DNA-directed RNA polymerase subunit beta' -
  JMUB1235_RS00585 (JMUB1235_0118) - 95439..95804 (+) 366 WP_002986560.1 DUF1033 family protein -
  JMUB1235_RS00590 (JMUB1235_0119) comYA 95897..96835 (+) 939 WP_020904831.1 competence type IV pilus ATPase ComGA Machinery gene
  JMUB1235_RS00595 (JMUB1235_0120) comYB 96771..97805 (+) 1035 WP_226316548.1 competence type IV pilus assembly protein ComGB Machinery gene
  JMUB1235_RS00600 (JMUB1235_0121) comYC 97807..98133 (+) 327 WP_002986552.1 competence type IV pilus major pilin ComGC Machinery gene
  JMUB1235_RS00605 (JMUB1235_0122) comGD 98108..98536 (+) 429 WP_002986548.1 competence type IV pilus minor pilin ComGD -
  JMUB1235_RS00610 (JMUB1235_0123) comGE 98493..98777 (+) 285 WP_011284422.1 competence type IV pilus minor pilin ComGE -
  JMUB1235_RS00615 (JMUB1235_0124) comYF 98770..99204 (+) 435 WP_020904833.1 competence type IV pilus minor pilin ComGF Machinery gene
  JMUB1235_RS00620 (JMUB1235_0125) comGG 99188..99514 (+) 327 WP_002986539.1 competence type IV pilus minor pilin ComGG -
  JMUB1235_RS00625 (JMUB1235_0126) comYH 99612..100565 (+) 954 WP_010921802.1 class I SAM-dependent methyltransferase Machinery gene
  JMUB1235_RS00630 (JMUB1235_0127) - 100624..101820 (+) 1197 WP_020904834.1 acetate kinase -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 35041.28 Da        Isoelectric Point: 8.5825

>NTDB_id=68198 JMUB1235_RS00590 WP_020904831.1 95897..96835(+) (comYA) [Streptococcus pyogenes strain JMUB1235]
MVQALAKAILAKAEQVQAQDIYILPRADQYDLFLRIGDERRLVDVYQSDRMAPLISHFKFVAGMIVGEKRRCQVGSCDYK
LSKDKQLSLRLSSVGDYRGHESLVIRLLHHQNKSVHYWFDGLTKVANQVGGRGLYLFAGPVGSGKTTLMYQLISSYHQEA
QVISIEDPVEIKNHQILQLQVNDDIGMTYDNLIKLSLRHRPDILVIGEIRDSQTARAVIRASLTGAMVFSTVHAKSISGV
YARLLELGVTKAELSNCLALIAYQRLLNGGALIDSTQNEFEYYSSSNWNQQIDQLLEAGHLNPKQAKLEKII

Nucleotide


Download         Length: 939 bp        

>NTDB_id=68198 JMUB1235_RS00590 WP_020904831.1 95897..96835(+) (comYA) [Streptococcus pyogenes strain JMUB1235]
ATGGTACAAGCATTAGCAAAAGCTATTCTAGCAAAAGCTGAACAGGTTCAGGCACAAGATATTTATATTTTGCCAAGAGC
AGATCAATATGATCTTTTTTTACGAATAGGAGATGAAAGGAGATTAGTTGATGTTTATCAGAGCGATCGGATGGCTCCTC
TTATTAGTCACTTTAAATTCGTTGCAGGAATGATAGTTGGTGAAAAGAGACGTTGTCAGGTGGGTTCATGTGATTATAAG
CTTAGTAAAGATAAGCAGTTATCTTTGCGCTTATCTAGCGTGGGTGATTATCGCGGGCATGAAAGCTTAGTGATTCGTCT
GCTTCATCATCAAAATAAAAGTGTACATTATTGGTTTGATGGATTGACAAAAGTAGCCAATCAAGTTGGCGGTAGAGGGT
TGTATTTATTTGCAGGACCAGTTGGGTCTGGGAAGACAACCTTGATGTACCAGCTGATTTCGAGTTATCATCAAGAAGCA
CAGGTTATTAGTATAGAAGATCCTGTAGAAATTAAAAATCACCAGATTTTACAATTACAAGTGAATGATGATATTGGTAT
GACTTATGACAATTTGATCAAACTGTCTTTACGCCATCGACCAGATATTTTAGTTATTGGTGAGATTCGAGATAGTCAAA
CAGCAAGAGCCGTTATTAGGGCTAGTCTAACAGGTGCCATGGTTTTTTCAACGGTTCACGCTAAAAGTATCTCGGGTGTT
TATGCAAGATTGTTAGAACTTGGTGTAACGAAAGCAGAACTGTCTAATTGCTTAGCATTAATTGCTTACCAAAGGTTACT
TAATGGAGGAGCATTGATTGACTCTACTCAAAACGAATTTGAATATTATTCCTCATCGAACTGGAATCAACAAATTGATC
AGCTTCTTGAGGCAGGACATCTCAATCCCAAGCAAGCTAAGCTTGAAAAAATTATCTAG

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(9-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus mutans UA140

61.736

99.679

0.615
  comYA Streptococcus mutans UA159

61.736

99.679

0.615
  comYA Streptococcus gordonii str. Challis substr. CH1

60.772

99.679

0.606
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

60.645

99.359

0.603
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

60.129

99.679

0.599
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae D39

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae R6

59.486

99.679

0.593
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

59.486

99.679

0.593
  comGA Lactococcus lactis subsp. cremoris KW2

50.482

99.679

0.503
  comGA Latilactobacillus sakei subsp. sakei 23K

39.655

92.949

0.369

Multiple sequence alignment