Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   M0696_RS09140 Genome accession   NZ_CP096590
Coordinates   1786255..1787505 (+) Length   416 a.a.
NCBI ID   WP_166852844.1    Uniprot ID   -
Organism   Bacillus rugosus strain A78.1     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1781255..1792505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M0696_RS09110 (M0696_09110) - 1781344..1782630 (+) 1287 WP_222142848.1 pitrilysin family protein -
  M0696_RS09115 (M0696_09115) - 1782685..1783413 (+) 729 WP_222142849.1 SDR family oxidoreductase -
  M0696_RS09120 (M0696_09120) - 1783494..1783751 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  M0696_RS09125 (M0696_09125) - 1783882..1784673 (+) 792 WP_003220998.1 YmfK family protein -
  M0696_RS09130 (M0696_09130) rodZ 1784740..1785606 (+) 867 WP_217501545.1 cell shape determination protein RodZ -
  M0696_RS09135 (M0696_09135) pgsA 1785656..1786237 (+) 582 WP_166852847.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  M0696_RS09140 (M0696_09140) cinA 1786255..1787505 (+) 1251 WP_166852844.1 competence/damage-inducible protein A Machinery gene
  M0696_RS09145 (M0696_09145) recA 1787678..1788724 (+) 1047 WP_014113838.1 recombinase RecA Machinery gene
  M0696_RS09150 (M0696_09150) - 1788892..1790064 (+) 1173 WP_166852840.1 serine hydrolase domain-containing protein -
  M0696_RS09155 (M0696_09155) rny 1790341..1791903 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45584.90 Da        Isoelectric Point: 5.1554

>NTDB_id=681952 M0696_RS09140 WP_166852844.1 1786255..1787505(+) (cinA) [Bacillus rugosus strain A78.1]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANALGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLTEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACREKGITISAAESFTGGLFSEWLTDLSGASKLFAGGIVCYTNDVKQNVLD
VKKETLDQFGAVSKECASELAKGVQKLTGSDIGISFTGVAGPDTQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=681952 M0696_RS09140 WP_166852844.1 1786255..1787505(+) (cinA) [Bacillus rugosus strain A78.1]
ATGGAATTTCCAAAAAAAGCAGAAATTATTGCAGTCGGTTCAGAGTTGTTGCTTGGCCAGATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGAGTGAACGTATTTTATCATACAGCAGTCGGAGATAACCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCCGAAGAACGCTCCGACTTCATTATTTTTTCAGGAGGTCTCGGACCGACAAAAGATGATCTG
ACGAAAGAAACGATTGCAAATGCGCTAGGACGTCCGCTTGTGTTAAATGATGAGGCGTTCCAATCCATTGAGGACTATTT
CAAACGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATTGAAGGATCCGACGTACTGGCAAATC
ACTTTGGAATGGCACCGGGAATGCTTACAGAGCATGAATCGCGCTTTTATATGCTTCTTCCTGGGCCGCCAAGCGAATTG
CGTCCCATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTGAAAAAGATGGGTTCAAATGAAAAAATTGTGTCAACCGTTCT
TCGCTTTTTCGGTATCGGAGAGTCTCAGCTTGAAGCCGATTTGGAAGATATTATTGATGCACAAACAAACCCGACAATCG
CTCCTTTGGCGGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAGCATGCTGACGAAAAGGAAACTGAGCGTCTGTTA
AAAGAAACAGAGGCTGTTATCTTAGAACGTGTCGGTGAATTTTTCTATGGCTACGATGATACTTCCCTTGTAAAGGAGCT
TTCTAAAGCATGTAGGGAAAAAGGCATTACGATTTCCGCGGCGGAAAGCTTTACCGGCGGGCTGTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAAAACTATTTGCCGGCGGCATCGTTTGCTATACAAACGACGTAAAGCAGAATGTGCTTGAT
GTCAAGAAGGAAACATTAGATCAATTTGGCGCGGTCAGCAAGGAGTGCGCATCAGAGCTGGCAAAGGGTGTTCAAAAGCT
CACTGGCAGCGACATCGGCATCAGCTTTACCGGTGTAGCAGGGCCTGATACTCAAGAAGGGCATGAGCCTGGACATGTGT
TTATCGGCATTTCAGCAAATGGAAAAGAAGAGGTTCACGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGTGCTAAATACGGCTGCCATTTAATCTTGAAGCTTTTAGAGCAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Competence-damaged protein (CinA)

(261-412)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

97.837

100

0.978
  cinA Streptococcus mitis SK321

45.694

100

0.459
  cinA Streptococcus mitis NCTC 12261

45.694

100

0.459
  cinA Streptococcus pneumoniae TIGR4

45.455

100

0.457
  cinA Streptococcus pneumoniae Rx1

45.215

100

0.454
  cinA Streptococcus pneumoniae R6

45.215

100

0.454
  cinA Streptococcus mutans UA159

45.521

99.279

0.452
  cinA Streptococcus pneumoniae D39

44.976

100

0.452
  cinA Streptococcus suis isolate S10

41.114

90.625

0.373