Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   MTO69_RS04415 Genome accession   NZ_CP096199
Coordinates   918359..918652 (+) Length   97 a.a.
NCBI ID   WP_248331465.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 913359..923652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS04400 (MTO69_04400) lon 913374..915725 (+) 2352 WP_248331461.1 endopeptidase La -
  MTO69_RS04405 (MTO69_04405) - 915919..916191 (+) 273 WP_038172935.1 HU family DNA-binding protein -
  MTO69_RS04410 (MTO69_04410) ppiD 916365..918221 (+) 1857 WP_248331463.1 peptidylprolyl isomerase -
  MTO69_RS04415 (MTO69_04415) comEA 918359..918652 (+) 294 WP_248331465.1 ComEA family DNA-binding protein Machinery gene
  MTO69_RS04420 (MTO69_04420) cmk 918794..919474 (+) 681 WP_248331467.1 (d)CMP kinase -
  MTO69_RS04425 (MTO69_04425) rpsA 919578..921248 (+) 1671 WP_248331469.1 30S ribosomal protein S1 -
  MTO69_RS04430 (MTO69_04430) ihfB 921461..921742 (+) 282 WP_248331471.1 integration host factor subunit beta -
  MTO69_RS04435 (MTO69_04435) - 921884..922162 (+) 279 WP_248331473.1 lipopolysaccharide assembly protein LapA domain-containing protein -
  MTO69_RS04440 (MTO69_04440) lapB 922191..923360 (+) 1170 WP_248331475.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10632.29 Da        Isoelectric Point: 5.7994

>NTDB_id=680251 MTO69_RS04415 WP_248331465.1 918359..918652(+) (comEA) [Vibrio sinaloensis strain YA2]
MIKQLVFILVLLCSVPMTFAQQETENVKYEGIEITVNINQASAEELADLLQGIGLKKAQAIVSYREQNGNFSSADGLTAV
KGIGLATVEKNRHRIQL

Nucleotide


Download         Length: 294 bp        

>NTDB_id=680251 MTO69_RS04415 WP_248331465.1 918359..918652(+) (comEA) [Vibrio sinaloensis strain YA2]
ATGATAAAACAGTTAGTTTTTATACTCGTTCTGCTATGTAGCGTGCCTATGACCTTCGCACAACAGGAGACGGAGAACGT
CAAGTATGAAGGGATTGAGATTACCGTCAATATTAACCAAGCTAGTGCTGAAGAACTGGCAGATTTATTACAGGGAATCG
GTCTGAAAAAAGCGCAAGCTATTGTGAGTTATCGTGAGCAAAACGGTAACTTTAGCAGTGCCGATGGTTTAACTGCGGTC
AAAGGTATTGGCCTCGCTACCGTAGAGAAAAATCGCCACCGGATTCAATTGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(35-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

58.511

96.907

0.567
  comEA Vibrio cholerae strain A1552

58.511

96.907

0.567
  comEA Vibrio campbellii strain DS40M4

56.383

96.907

0.546
  comEA Vibrio parahaemolyticus RIMD 2210633

55.319

96.907

0.536
  comEA/comE1 Glaesserella parasuis strain SC1401

63.333

61.856

0.392
  comEA Acinetobacter baylyi ADP1

55.385

67.01

0.371
  comE1/comEA Haemophilus influenzae Rd KW20

60

61.856

0.371
  comEA Legionella pneumophila str. Paris

36

100

0.371
  comEA Legionella pneumophila strain ERS1305867

36

100

0.371