Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   MTO69_RS00185 Genome accession   NZ_CP096199
Coordinates   41033..42142 (+) Length   369 a.a.
NCBI ID   WP_248330057.1    Uniprot ID   -
Organism   Vibrio sinaloensis strain YA2     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 36033..47142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MTO69_RS00165 (MTO69_00165) trkA 36503..37879 (-) 1377 WP_176287075.1 Trk system potassium transporter TrkA -
  MTO69_RS00170 (MTO69_00170) rsmB 37936..39216 (-) 1281 WP_248330051.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  MTO69_RS00175 (MTO69_00175) fmt 39307..40254 (-) 948 WP_248330053.1 methionyl-tRNA formyltransferase -
  MTO69_RS00180 (MTO69_00180) def 40281..40799 (-) 519 WP_248330055.1 peptide deformylase -
  MTO69_RS00185 (MTO69_00185) dprA 41033..42142 (+) 1110 WP_248330057.1 DNA-processing protein DprA Machinery gene
  MTO69_RS00190 (MTO69_00190) - 42145..42624 (+) 480 WP_282567525.1 DUF494 family protein -
  MTO69_RS00195 (MTO69_00195) - 42640..43224 (+) 585 WP_248330059.1 type I DNA topoisomerase -
  MTO69_RS00200 (MTO69_00200) - 43274..44407 (-) 1134 WP_248330061.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  MTO69_RS00205 (MTO69_00205) purE 44411..44896 (-) 486 WP_248330063.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  MTO69_RS00210 (MTO69_00210) hemF 45222..46139 (+) 918 WP_248330065.1 oxygen-dependent coproporphyrinogen oxidase -
  MTO69_RS00215 (MTO69_00215) aroE 46215..47048 (+) 834 WP_248330067.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39464.49 Da        Isoelectric Point: 7.8193

>NTDB_id=680239 MTO69_RS00185 WP_248330057.1 41033..42142(+) (dprA) [Vibrio sinaloensis strain YA2]
MSEHSLSAWLALYFTPGIGPKAFNKLLARDAPENIVASSAAAMEALGLTLKQREFLRHQALAEVALCLEWQQAATDHRIL
LQSDSDYPPQLRQVAAAPAVLFVKGRVETLALPQLAIVGSRNASVDALSSARSFAKALVEHQLAVTSGLALGVDGYAHDG
ALQASGTTLAVLGCGLNTIYPARHRQLAERIVGAGGALISEFHPNAKPKADHFPRRNRIISGLSLGVLVVEAAQKSGSLI
TARYALEQGREVFALPGSVHNPQATGCNLLIKQGACLVLNIEDILNELDSLLDWSNQTQLPLFEQKIAIKQQLPFASLLA
NVGSKATPVDILANRTNIPVQEVMMQLLELELQGYVVAVSGGYIRKGRG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=680239 MTO69_RS00185 WP_248330057.1 41033..42142(+) (dprA) [Vibrio sinaloensis strain YA2]
ATGTCTGAACACTCGCTTTCTGCCTGGCTTGCGCTCTATTTTACCCCCGGGATCGGCCCCAAAGCCTTTAATAAACTGCT
CGCTCGCGATGCGCCAGAAAATATCGTCGCGTCGTCCGCAGCTGCCATGGAGGCGCTCGGGTTAACATTAAAGCAGCGAG
AGTTCTTGCGTCATCAAGCTTTGGCTGAGGTGGCGTTGTGCTTGGAATGGCAGCAGGCAGCAACGGATCATCGAATTTTG
CTGCAATCAGATAGTGACTATCCGCCGCAACTGCGCCAAGTGGCGGCCGCACCTGCAGTGCTGTTTGTCAAAGGCAGAGT
GGAGACGCTGGCATTGCCTCAGTTGGCGATAGTTGGCAGCAGAAATGCCAGTGTCGATGCACTGAGCAGTGCGCGCAGTT
TTGCAAAAGCGCTGGTGGAGCATCAACTGGCCGTGACCAGCGGGCTAGCGTTAGGGGTAGATGGTTATGCTCACGATGGG
GCATTGCAAGCGAGTGGCACAACTTTGGCTGTGCTTGGGTGCGGACTCAATACGATTTATCCGGCGCGGCATCGCCAGTT
AGCAGAACGGATCGTCGGCGCAGGCGGCGCGTTGATTTCTGAGTTCCATCCTAACGCTAAGCCCAAAGCGGATCACTTTC
CACGTCGCAACCGAATCATCAGTGGCTTATCGCTTGGGGTGTTGGTGGTTGAAGCGGCGCAAAAGAGCGGCTCTTTAATC
ACGGCACGATATGCGCTTGAACAGGGTCGCGAGGTGTTTGCCCTGCCTGGCTCGGTGCACAACCCACAAGCAACAGGTTG
TAACCTTTTGATAAAGCAAGGTGCATGCCTAGTGCTCAATATCGAAGACATCCTCAATGAGCTTGACTCGTTGCTTGATT
GGTCAAATCAAACCCAACTGCCGCTTTTTGAACAAAAAATAGCAATCAAACAACAATTGCCATTTGCTTCACTGTTAGCT
AACGTAGGAAGTAAGGCTACACCAGTTGATATTCTTGCAAACAGGACCAATATACCTGTGCAGGAAGTCATGATGCAGCT
CTTGGAGCTTGAGCTTCAAGGGTATGTTGTTGCAGTTTCCGGTGGCTATATTCGTAAGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(317-362)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.11

98.916

0.634
  dprA Vibrio cholerae strain A1552

56.836

100

0.575
  dprA Glaesserella parasuis strain SC1401

45.867

100

0.466
  dprA Neisseria meningitidis strain C311

39.401

100

0.428
  dprA Neisseria meningitidis MC58

39.401

100

0.428
  dprA Legionella pneumophila strain ERS1305867

42.424

98.374

0.417
  dprA Acinetobacter baumannii D1279779

40.698

93.225

0.379
  dprA Acinetobacter baumannii strain A118

40.407

93.225

0.377
  dprA Haemophilus influenzae Rd KW20

40.643

92.683

0.377
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

35.657

100

0.36