Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MZN46_RS08135 Genome accession   NZ_CP096153
Coordinates   1642170..1643414 (+) Length   414 a.a.
NCBI ID   WP_077952346.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL F2-0501     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1637170..1648414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN46_RS08115 (MZN46_08120) - 1638344..1639630 (+) 1287 WP_070231267.1 pitrilysin family protein -
  MZN46_RS08120 (MZN46_08125) - 1639723..1640454 (+) 732 WP_181332903.1 SDR family oxidoreductase -
  MZN46_RS08125 (MZN46_08130) - 1640505..1641434 (+) 930 WP_003730599.1 RodZ family helix-turn-helix domain-containing protein -
  MZN46_RS08130 (MZN46_08135) pgsA 1641525..1642103 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MZN46_RS08135 (MZN46_08140) cinA 1642170..1643414 (+) 1245 WP_077952346.1 competence/damage-inducible protein A Machinery gene
  MZN46_RS08140 (MZN46_08145) recA 1643687..1644733 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  MZN46_RS08145 (MZN46_08150) rny 1645034..1646596 (+) 1563 WP_003738907.1 ribonuclease Y -
  MZN46_RS08150 (MZN46_08155) - 1646710..1647207 (+) 498 WP_181332904.1 GNAT family N-acetyltransferase -
  MZN46_RS08155 (MZN46_08160) - 1647212..1648015 (+) 804 WP_003721906.1 TIGR00282 family metallophosphoesterase -
  MZN46_RS08160 (MZN46_08165) - 1648032..1648394 (+) 363 WP_003721907.1 YlbF family regulator -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45679.83 Da        Isoelectric Point: 4.6526

>NTDB_id=679878 MZN46_RS08135 WP_077952346.1 1642170..1643414(+) (cinA) [Listeria monocytogenes strain FSL F2-0501]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=679878 MZN46_RS08135 WP_077952346.1 1642170..1643414(+) (cinA) [Listeria monocytogenes strain FSL F2-0501]
TTGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCAACGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTAGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTACTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTACTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGCTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACCTATG
CTGGTGATAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGGCTTGTAAAGGATACT
GAGGAAGAAATATTGCGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCGCTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGCCCAGATAGTTTAGAAGGTCATCCTGCTGGTACTATTTGGATTGGGT
TAAGCGTTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAACCATAATCGCCGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.345

98.792

0.507
  cinA Streptococcus pneumoniae TIGR4

49.048

100

0.498
  cinA Streptococcus mitis SK321

48.687

100

0.493
  cinA Streptococcus mitis NCTC 12261

48.449

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.333

100

0.49
  cinA Streptococcus pneumoniae R6

48.333

100

0.49
  cinA Streptococcus pneumoniae D39

48.095

100

0.488
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386