Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   MZN51_RS03985 Genome accession   NZ_CP096151
Coordinates   759599..760843 (+) Length   414 a.a.
NCBI ID   WP_077952905.1    Uniprot ID   -
Organism   Listeria monocytogenes strain FSL W1-0110     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 754599..765843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZN51_RS03965 (MZN51_03965) - 755773..757059 (+) 1287 WP_003736567.1 pitrilysin family protein -
  MZN51_RS03970 (MZN51_03970) - 757152..757883 (+) 732 WP_003730600.1 SDR family oxidoreductase -
  MZN51_RS03975 (MZN51_03975) - 757934..758863 (+) 930 WP_003730599.1 RodZ family helix-turn-helix domain-containing protein -
  MZN51_RS03980 (MZN51_03980) pgsA 758954..759532 (+) 579 WP_003723921.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  MZN51_RS03985 (MZN51_03985) cinA 759599..760843 (+) 1245 WP_077952905.1 competence/damage-inducible protein A Machinery gene
  MZN51_RS03990 (MZN51_03990) recA 761116..762162 (+) 1047 WP_003725961.1 recombinase RecA Machinery gene
  MZN51_RS03995 (MZN51_03995) rny 762463..764025 (+) 1563 WP_003738907.1 ribonuclease Y -
  MZN51_RS04000 (MZN51_04000) - 764131..764628 (+) 498 WP_003736573.1 GNAT family N-acetyltransferase -
  MZN51_RS04005 (MZN51_04005) - 764633..765436 (+) 804 WP_070037146.1 TIGR00282 family metallophosphoesterase -
  MZN51_RS04010 (MZN51_04010) - 765453..765815 (+) 363 WP_070037144.1 RicAFT regulatory complex protein RicA family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45602.71 Da        Isoelectric Point: 4.6520

>NTDB_id=679788 MZN51_RS03985 WP_077952905.1 759599..760843(+) (cinA) [Listeria monocytogenes strain FSL W1-0110]
MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVGDNPARLKEVIEIAENRSDILIFTGGLGPTEDDITKQ
ILAAHLQKQLVEDEYHMNKINEYFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNEVVVRITATAKTKEEASRLVKDT
EEEILRRDGTFLYGYGEVSLSELVTAMLLEKELTISAAESFTAGLFQAEIAHFPGISKIFKGGMVTYSEETKQSILQVSP
QVIKEKGVVSAECAKEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSAKGYETEAFQFVYGRDRNHNRRRAV
KQGFQLIKQFLDAN

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=679788 MZN51_RS03985 WP_077952905.1 759599..760843(+) (cinA) [Listeria monocytogenes strain FSL W1-0110]
TTGGCAAGTGCGGAAATCATTGCTGTAGGAACAGAACTATTACTTGGACAAATTGTTAATTCTAATGCTGCGTTTATTTC
ACAAGAATTAGCTGCAGACGGAATATATGTATATCATCACACGGTAGTTGGAGATAATCCAGCGCGTTTAAAAGAAGTAA
TTGAAATCGCTGAAAACCGAAGTGACATTTTAATCTTTACCGGCGGACTTGGACCGACTGAGGATGATATTACAAAACAA
ATCTTGGCTGCTCATCTACAAAAGCAATTAGTGGAAGATGAATACCATATGAATAAAATTAATGAGTATTTTACTTCTAG
GAATAGGACTATGACCGAAAATAATAAATTACAAGCGGTTATTATTGAAGATTCCATCGTATTAAATAATGATTTTGGCT
TTGCGGCTGGAATGTACTTAAGAGAAAACAATCATACTTACGTTTTGCTACCAGGTCCACCATCTGAAATGAAACCAATG
TTTACAAGCTATGCTAACCCATTGCTTTTAAGCGAAAGTGGCGATCAAAACATTTTAGAATCCAAAATTATGCGTTTTTT
CGGTATTGGAGAATCACAATTAGCTGCGGATTTAAATGATTTGATTGTCACACAAGTCAACCCGACGATTGCGACATATG
CTGGTGACAATGAAGTCGTGGTTCGTATCACAGCGACAGCTAAAACAAAAGAAGAAGCAAGCAGACTTGTGAAGGATACC
GAGGAAGAAATATTACGCCGAGATGGTACCTTTTTATATGGATATGGAGAGGTGTCATTGTCTGAATTAGTTACGGCGAT
GTTACTTGAAAAAGAACTTACCATCTCTGCTGCAGAAAGTTTCACTGCTGGTTTGTTCCAAGCAGAAATTGCCCACTTTC
CTGGCATTTCGAAAATTTTCAAGGGTGGTATGGTGACATACAGTGAAGAAACAAAACAATCTATATTACAAGTATCTCCC
CAAGTAATAAAAGAAAAAGGCGTTGTTAGTGCGGAATGTGCAAAGGAAATGGCTGAAAATGTAAGCCGCCTTTGTAAGAC
GGATATTGGAATCAGTTTTACAGGTGTTGCAGGTCCAGATAGTTTAGAAGGTCATCCTGCTGGCACTATTTGGATTGGGC
TAAGCGCTAAAGGTTATGAAACAGAGGCTTTTCAGTTTGTTTATGGAAGAGATCGAAATCATAATCGACGCCGTGCAGTA
AAACAAGGATTTCAGTTAATTAAACAATTTTTAGACGCGAATTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(6-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

51.589

98.792

0.51
  cinA Streptococcus pneumoniae TIGR4

49.286

100

0.5
  cinA Streptococcus mitis SK321

49.165

100

0.498
  cinA Streptococcus mitis NCTC 12261

48.926

100

0.495
  cinA Streptococcus pneumoniae Rx1

48.571

100

0.493
  cinA Streptococcus pneumoniae R6

48.571

100

0.493
  cinA Streptococcus pneumoniae D39

48.333

100

0.49
  cinA Streptococcus mutans UA159

48.544

99.517

0.483
  cinA Streptococcus suis isolate S10

38.835

99.517

0.386