Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MZO21_RS01145 Genome accession   NZ_CP096120
Coordinates   237615..239723 (+) Length   702 a.a.
NCBI ID   WP_248101197.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232615..244723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS01125 (MZO21_01120) comM 234675..235733 (+) 1059 WP_248101189.1 pilus assembly protein PilM Machinery gene
  MZO21_RS01130 (MZO21_01125) pilN 235733..236392 (+) 660 WP_248101191.1 PilN domain-containing protein Machinery gene
  MZO21_RS01135 (MZO21_01130) comO 236389..237072 (+) 684 WP_248101193.1 type 4a pilus biogenesis protein PilO Machinery gene
  MZO21_RS01140 (MZO21_01135) pilP 237072..237599 (+) 528 WP_248101195.1 pilus assembly protein PilP Machinery gene
  MZO21_RS01145 (MZO21_01140) pilQ 237615..239723 (+) 2109 WP_248101197.1 type IV pilus secretin PilQ Machinery gene
  MZO21_RS01150 (MZO21_01145) - 239812..240303 (+) 492 WP_248101199.1 shikimate kinase -
  MZO21_RS01155 (MZO21_01150) aroB 240324..241409 (+) 1086 WP_248101201.1 3-dehydroquinate synthase -
  MZO21_RS01160 (MZO21_01155) - 241420..242226 (+) 807 WP_248101203.1 hypothetical protein -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 75973.19 Da        Isoelectric Point: 5.4603

>NTDB_id=679559 MZO21_RS01145 WP_248101197.1 237615..239723(+) (pilQ) [Acinetobacter portensis strain JNE5]
MNNSTRDFIFGDGNTMNSLFRQFSMGAIAFAVVQTANAQVSITNIVPMEVPGQGTEIRVMFNGIPPQPAAYQLEQPSRLV
LDFEKAQQKLQQKVVPVATKEANSVDVSSDDQRSRLTVNLANSGAFTTRVEGNTFILKINSAETAVKAKNVPVQQQLAKG
VSNIGFQRGMDGEGQIVIDLLGKDTPVDVQQSGSKIIVRTIGNKIPTHLARRLNVNDFATPVSTIDSHNDGANGVITIQA
TGGYEYMAYQAENKLTISLKRPADQNAAKPRSATSYTGQKLSLDFQDIEVRRVLQLLADFTNINIVAADNVGGSISLRLK
DVPWDQALDIILKAKNLDMRRTGNVIWVAPVEELIKFEDNQAKAIAQSIKLAPIQTEYIVLHYAKAADILKLIEDSRDGK
GAASNGTSGDSSLALESLLSNRGSAVSDSRTNTLIVNDTAVNIDKIRKMIGLLDVAVKQVMVEARVVTADTTFAHELGIN
WNLQRDNPSFLGGSNGSNVWGGDFSPKFDLGVDLGTATAGNFSFGLLKISDYMLNLELTAMQSDGHGEVLSAPKVLTGDK
QKAYILRGDQIPYQTWSAESGVTTTFVDANLKLEVTPSITPDGKVQMALKIEKDTLGELTLAGYAIKTNELETNVLVGDG
ETVVLGGIFDDAKSNTYRKVPFLGDIPVVGNLFKSNVKTNLQSELLIFVTPRIVNDSVSRNH

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=679559 MZO21_RS01145 WP_248101197.1 237615..239723(+) (pilQ) [Acinetobacter portensis strain JNE5]
ATGAATAATAGTACAAGAGATTTTATATTTGGGGATGGTAATACAATGAACAGTTTGTTCCGTCAATTTTCTATGGGTGC
AATTGCATTTGCAGTAGTACAAACGGCAAATGCTCAAGTGAGTATTACTAATATTGTTCCTATGGAAGTTCCTGGTCAAG
GAACTGAAATTCGTGTGATGTTTAATGGTATTCCGCCACAACCAGCGGCTTATCAGCTTGAGCAGCCATCGCGTCTTGTT
TTAGATTTTGAAAAAGCACAGCAAAAATTACAACAAAAAGTTGTTCCTGTTGCCACGAAAGAAGCAAACTCTGTTGATGT
AAGCTCAGATGATCAGCGTTCACGTCTAACAGTTAATTTAGCAAATTCAGGTGCATTTACCACACGTGTTGAAGGTAATA
CCTTTATTCTTAAAATTAATTCAGCGGAAACTGCTGTGAAAGCGAAAAATGTACCTGTGCAGCAACAACTTGCGAAGGGT
GTTTCAAATATTGGCTTTCAGCGCGGTATGGATGGTGAAGGTCAAATTGTTATTGATTTGCTAGGAAAAGATACACCTGT
TGATGTACAGCAAAGTGGTAGCAAAATTATTGTGCGCACGATTGGTAATAAAATACCGACACATTTAGCACGTCGTTTAA
ATGTTAATGACTTTGCAACACCTGTTTCAACAATTGATTCACATAATGATGGCGCAAATGGTGTAATCACTATTCAGGCA
ACTGGTGGCTATGAATACATGGCTTACCAAGCTGAAAATAAATTAACGATTAGTTTGAAGCGACCTGCTGATCAAAATGC
TGCGAAGCCTCGTTCGGCAACAAGCTATACAGGTCAAAAACTTTCATTAGATTTTCAAGATATTGAAGTACGTCGTGTAT
TACAGCTTTTAGCAGATTTTACTAATATCAATATTGTTGCTGCTGACAATGTTGGTGGAAGTATTTCTTTGCGTTTAAAG
GATGTTCCTTGGGATCAAGCATTAGACATTATTTTAAAAGCTAAAAACTTAGATATGCGTCGCACAGGTAATGTAATTTG
GGTTGCACCTGTCGAAGAATTAATTAAATTTGAAGATAATCAAGCAAAAGCAATTGCACAAAGCATTAAGCTTGCTCCAA
TTCAAACAGAATATATAGTACTTCATTATGCCAAAGCTGCTGATATTCTTAAATTAATTGAAGATTCTAGAGATGGGAAA
GGCGCTGCATCGAATGGAACATCGGGAGATAGCTCTTTAGCTTTAGAGAGCCTTTTAAGTAATCGTGGTAGTGCTGTTTC
AGATTCAAGAACCAATACATTAATTGTGAATGATACAGCAGTTAATATTGATAAAATCCGTAAAATGATTGGTTTGCTTG
ATGTTGCAGTCAAGCAAGTTATGGTTGAAGCAAGAGTTGTAACAGCCGATACAACTTTCGCTCATGAGTTGGGAATTAAT
TGGAACCTTCAGCGAGACAATCCATCATTCTTAGGTGGTTCTAATGGGTCCAATGTGTGGGGAGGAGATTTTTCGCCTAA
ATTTGATTTAGGTGTTGATTTGGGTACCGCAACAGCAGGTAATTTTAGTTTTGGATTATTAAAAATCTCTGATTACATGT
TGAATCTTGAATTAACAGCAATGCAATCAGATGGACATGGTGAAGTGCTTTCTGCGCCAAAAGTTTTGACGGGTGATAAG
CAAAAAGCTTATATCCTCCGTGGTGATCAGATTCCATATCAAACTTGGAGTGCAGAGTCTGGTGTAACCACAACTTTTGT
TGATGCTAACTTGAAGCTAGAAGTAACACCAAGCATTACACCAGATGGCAAAGTTCAAATGGCCTTGAAAATTGAAAAAG
ACACTTTGGGTGAGTTAACGCTTGCAGGTTATGCTATTAAGACCAATGAACTAGAAACCAATGTTTTGGTTGGTGATGGT
GAAACTGTTGTGCTTGGTGGTATTTTTGATGATGCAAAAAGTAATACTTACAGAAAAGTACCATTCTTAGGTGATATTCC
TGTTGTTGGGAACTTATTTAAGAGTAATGTGAAAACAAATCTTCAATCTGAGCTATTGATTTTTGTTACACCGCGAATTG
TTAATGACAGTGTTTCAAGAAATCATTAA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(56-137)

Bacterial type II and III secretion system protein (Secretin)

(540-694)

Secretin and TonB N terminus short domain (STN)

(304-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-459)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii strain A118

61.728

100

0.641
  pilQ Acinetobacter baumannii D1279779

61.728

100

0.641
  comQ Acinetobacter baylyi ADP1

59.046

100

0.6
  pilQ Pseudomonas aeruginosa PAK

39.074

98.433

0.385