Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   MZO21_RS01130 Genome accession   NZ_CP096120
Coordinates   235733..236392 (+) Length   219 a.a.
NCBI ID   WP_248101191.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 230733..241392
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS01115 (MZO21_01110) - 231141..231944 (+) 804 WP_248101185.1 putative RNA methyltransferase -
  MZO21_RS01120 (MZO21_01115) ponA 231992..234508 (-) 2517 WP_248101187.1 PBP1A family penicillin-binding protein -
  MZO21_RS01125 (MZO21_01120) comM 234675..235733 (+) 1059 WP_248101189.1 pilus assembly protein PilM Machinery gene
  MZO21_RS01130 (MZO21_01125) pilN 235733..236392 (+) 660 WP_248101191.1 PilN domain-containing protein Machinery gene
  MZO21_RS01135 (MZO21_01130) comO 236389..237072 (+) 684 WP_248101193.1 type 4a pilus biogenesis protein PilO Machinery gene
  MZO21_RS01140 (MZO21_01135) pilP 237072..237599 (+) 528 WP_248101195.1 pilus assembly protein PilP Machinery gene
  MZO21_RS01145 (MZO21_01140) pilQ 237615..239723 (+) 2109 WP_248101197.1 type IV pilus secretin PilQ Machinery gene
  MZO21_RS01150 (MZO21_01145) - 239812..240303 (+) 492 WP_248101199.1 shikimate kinase -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24634.97 Da        Isoelectric Point: 4.8381

>NTDB_id=679556 MZO21_RS01130 WP_248101191.1 235733..236392(+) (pilN) [Acinetobacter portensis strain JNE5]
MAKINLLPWREELREKRKKQFIATSAGIALLGVLLVGLIWFFYDQKLNDQEQANQLILSTNQNLDHQLKSLDGLQEKRNQ
IIERMKLIQGLQSQRPIAVRLVDELARVTPENIYITRFARSGNKFTFEGKAESPNAVAEFLRNLESSSWYRNAFMNSFLA
GAEQPQGQTSLVPRPEAGYGTFVVTADLDEPSIEAVVAEQPAVTTEEQVIEVSASEVAQ

Nucleotide


Download         Length: 660 bp        

>NTDB_id=679556 MZO21_RS01130 WP_248101191.1 235733..236392(+) (pilN) [Acinetobacter portensis strain JNE5]
ATGGCAAAGATTAATTTACTCCCTTGGCGCGAAGAGCTAAGAGAAAAGAGAAAGAAGCAATTTATTGCTACAAGTGCAGG
TATTGCATTATTGGGTGTTTTGCTTGTTGGATTGATATGGTTTTTTTATGATCAAAAATTAAATGATCAAGAACAAGCAA
ACCAGCTTATTTTGAGTACTAATCAGAATTTAGATCATCAGTTAAAATCTTTAGATGGTTTGCAAGAAAAGCGTAATCAG
ATTATTGAGCGTATGAAGTTGATTCAAGGCTTGCAAAGTCAAAGACCTATTGCAGTTCGCTTGGTTGATGAGTTGGCGCG
AGTTACGCCTGAAAATATTTACATTACTCGTTTCGCGCGTTCAGGTAATAAATTTACTTTTGAAGGTAAAGCTGAAAGCC
CAAATGCAGTTGCAGAATTTCTACGTAATTTAGAATCATCGTCATGGTATAGAAATGCGTTTATGAACTCATTCCTTGCA
GGCGCTGAACAGCCTCAAGGTCAAACCTCTCTAGTTCCACGCCCAGAAGCGGGTTATGGCACTTTTGTGGTGACAGCAGA
TTTAGATGAGCCATCAATTGAGGCTGTTGTAGCAGAACAACCAGCAGTGACTACAGAAGAACAAGTTATTGAGGTTTCAG
CATCGGAGGTCGCGCAATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

68.557

88.584

0.607
  comN Acinetobacter baylyi ADP1

64.851

92.237

0.598