Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   MZO21_RS01140 Genome accession   NZ_CP096120
Coordinates   237072..237599 (+) Length   175 a.a.
NCBI ID   WP_248101195.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 232072..242599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS01125 (MZO21_01120) comM 234675..235733 (+) 1059 WP_248101189.1 pilus assembly protein PilM Machinery gene
  MZO21_RS01130 (MZO21_01125) pilN 235733..236392 (+) 660 WP_248101191.1 PilN domain-containing protein Machinery gene
  MZO21_RS01135 (MZO21_01130) comO 236389..237072 (+) 684 WP_248101193.1 type 4a pilus biogenesis protein PilO Machinery gene
  MZO21_RS01140 (MZO21_01135) pilP 237072..237599 (+) 528 WP_248101195.1 pilus assembly protein PilP Machinery gene
  MZO21_RS01145 (MZO21_01140) pilQ 237615..239723 (+) 2109 WP_248101197.1 type IV pilus secretin PilQ Machinery gene
  MZO21_RS01150 (MZO21_01145) - 239812..240303 (+) 492 WP_248101199.1 shikimate kinase -
  MZO21_RS01155 (MZO21_01150) aroB 240324..241409 (+) 1086 WP_248101201.1 3-dehydroquinate synthase -
  MZO21_RS01160 (MZO21_01155) - 241420..242226 (+) 807 WP_248101203.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19158.24 Da        Isoelectric Point: 7.7730

>NTDB_id=679558 MZO21_RS01140 WP_248101195.1 237072..237599(+) (pilP) [Acinetobacter portensis strain JNE5]
MNIKTLTLLCFATATFVGCDSRIDAVNLQMAEIRSQAPLPIEPTPSFDPAPVFNYSALQQRSPFIQSSLAAELKLMAGKR
VYPNLSRPLQPLESYTLESLSMKGSFKNGTGKILALIQTPDGEVERVQVGSYMGTSYGRIVKITPTQIDLIEIIPDGRDG
YVERPRSLILIGLAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=679558 MZO21_RS01140 WP_248101195.1 237072..237599(+) (pilP) [Acinetobacter portensis strain JNE5]
ATGAATATTAAAACATTAACGCTTCTTTGTTTTGCAACAGCGACATTTGTAGGCTGTGACTCTCGTATAGACGCGGTTAA
TTTACAAATGGCTGAAATTCGTAGTCAAGCACCACTACCTATTGAGCCAACACCGAGTTTTGATCCAGCACCTGTTTTTA
ACTATTCAGCGCTTCAGCAACGTAGCCCATTTATACAGAGTTCACTTGCTGCAGAATTGAAACTTATGGCGGGTAAGCGT
GTATATCCTAATTTGTCACGTCCATTGCAGCCATTAGAAAGCTACACGCTTGAATCTTTGAGCATGAAGGGTAGCTTTAA
AAATGGTACAGGGAAAATTCTTGCTTTAATTCAAACACCTGATGGTGAGGTTGAACGTGTACAAGTTGGTAGCTACATGG
GAACAAGCTATGGACGTATCGTGAAAATCACACCAACGCAAATTGATTTAATTGAAATTATTCCAGATGGCAGAGATGGA
TATGTTGAACGTCCAAGAAGTCTAATTTTAATTGGGCTTGCGCCATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(30-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

69.714

100

0.697
  comL Acinetobacter baylyi ADP1

66.286

100

0.663