Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   MZO21_RS01135 Genome accession   NZ_CP096120
Coordinates   236389..237072 (+) Length   227 a.a.
NCBI ID   WP_248101193.1    Uniprot ID   -
Organism   Acinetobacter portensis strain JNE5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231389..242072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MZO21_RS01120 (MZO21_01115) ponA 231992..234508 (-) 2517 WP_248101187.1 PBP1A family penicillin-binding protein -
  MZO21_RS01125 (MZO21_01120) comM 234675..235733 (+) 1059 WP_248101189.1 pilus assembly protein PilM Machinery gene
  MZO21_RS01130 (MZO21_01125) pilN 235733..236392 (+) 660 WP_248101191.1 PilN domain-containing protein Machinery gene
  MZO21_RS01135 (MZO21_01130) comO 236389..237072 (+) 684 WP_248101193.1 type 4a pilus biogenesis protein PilO Machinery gene
  MZO21_RS01140 (MZO21_01135) pilP 237072..237599 (+) 528 WP_248101195.1 pilus assembly protein PilP Machinery gene
  MZO21_RS01145 (MZO21_01140) pilQ 237615..239723 (+) 2109 WP_248101197.1 type IV pilus secretin PilQ Machinery gene
  MZO21_RS01150 (MZO21_01145) - 239812..240303 (+) 492 WP_248101199.1 shikimate kinase -
  MZO21_RS01155 (MZO21_01150) aroB 240324..241409 (+) 1086 WP_248101201.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 25993.82 Da        Isoelectric Point: 6.5024

>NTDB_id=679557 MZO21_RS01135 WP_248101193.1 236389..237072(+) (comO) [Acinetobacter portensis strain JNE5]
MSLNDLDDMVEEKPVAKKKKINVEKFFQQWNTLDTNNYGGWPFSVKLTIWIFVLAGIMFLGYMLLLKPKMNDISNANAQE
QNLLNEFRAKDSKLRNLQAYQRQLQEMEANFNQQLEQLPKETEIPGLVEDINVTGVNSGLKFKNIRLEAEVKQEFFIEQP
ISMEAVGDYHSFGAFMSGIAALPRIVTLHDFTLTAGKNTEKKTDIPQITYNVKAKTYRYIGNTEGAK

Nucleotide


Download         Length: 684 bp        

>NTDB_id=679557 MZO21_RS01135 WP_248101193.1 236389..237072(+) (comO) [Acinetobacter portensis strain JNE5]
ATGAGTTTAAATGACTTAGATGATATGGTTGAAGAAAAACCTGTTGCGAAAAAGAAAAAAATTAACGTAGAAAAATTCTT
TCAGCAATGGAATACCTTAGATACAAATAATTATGGTGGTTGGCCATTTTCCGTTAAGTTGACTATTTGGATATTTGTTC
TAGCGGGGATTATGTTCTTGGGTTATATGCTGTTGTTAAAGCCCAAAATGAATGATATTTCAAATGCAAATGCGCAAGAG
CAAAATTTGTTGAATGAGTTTCGGGCTAAAGATTCAAAACTCAGAAACTTACAGGCATATCAGCGCCAATTGCAAGAAAT
GGAAGCTAATTTTAATCAACAATTAGAGCAGCTTCCAAAAGAAACAGAAATTCCAGGTTTGGTTGAAGATATTAACGTGA
CTGGGGTGAATTCAGGACTTAAATTTAAAAACATTCGTCTTGAAGCTGAAGTTAAACAAGAGTTTTTTATCGAACAGCCA
ATTTCTATGGAAGCTGTAGGTGATTATCATTCTTTTGGCGCATTTATGAGTGGTATTGCAGCATTACCGCGTATTGTGAC
TTTACATGATTTTACTTTGACTGCTGGAAAAAATACTGAAAAGAAAACGGACATTCCGCAAATTACATATAACGTAAAAG
CTAAAACTTATCGTTATATAGGTAATACGGAAGGAGCAAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(74-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Acinetobacter baylyi ADP1

69.196

98.678

0.683
  pilO Acinetobacter baumannii D1279779

66.96

100

0.67