Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG776_RS27245 Genome accession   NZ_CP109592
Coordinates   6393713..6394393 (+) Length   226 a.a.
NCBI ID   WP_148013970.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01689     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6388713..6399393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG776_RS27220 (OG776_27210) - 6389837..6390031 (+) 195 WP_054231893.1 hypothetical protein -
  OG776_RS27235 (OG776_27225) tig 6391061..6392446 (+) 1386 WP_148013971.1 trigger factor -
  OG776_RS27240 (OG776_27230) clpP 6392980..6393585 (+) 606 WP_060897745.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG776_RS27245 (OG776_27235) clpP 6393713..6394393 (+) 681 WP_148013970.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG776_RS27250 (OG776_27240) clpX 6394554..6395840 (+) 1287 WP_148013969.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG776_RS27255 (OG776_27245) - 6395919..6396902 (-) 984 WP_329322679.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 24967.37 Da        Isoelectric Point: 4.6288

>NTDB_id=679368 OG776_RS27245 WP_148013970.1 6393713..6394393(+) (clpP) [Streptomyces sp. NBC_01689]
MNDFPGSGPYARTQAEYTGPRAESRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDP
DRDISVYINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAILLAAGTPGKRMALPNARVLIHQPYSETGRGQVSD
LEIAANEILRMRSQLEDMLAKHSTTPIEKIREDIERDKILTAEDALAYGLIDQIISTRKMNNSAVV

Nucleotide


Download         Length: 681 bp        

>NTDB_id=679368 OG776_RS27245 WP_148013970.1 6393713..6394393(+) (clpP) [Streptomyces sp. NBC_01689]
GTGAACGACTTCCCCGGCAGCGGCCCCTACGCCCGCACGCAGGCCGAGTACACCGGTCCTCGTGCGGAGTCCCGCTACGT
CATCCCGCGCTTCGTCGAGCGCACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTGTTCGAGGAGCGCGTGA
TCTTCCTCGGCGTGCAGATCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCC
GACCGTGACATCTCGGTCTACATCAACAGCCCCGGTGGCTCCTTCACGGCGCTCACCGCGATCTACGACACGATGCAGTT
CGTGAAGCCCGACATCCAGACGGTCTGCATGGGCCAGGCCGCCTCGGCCGCCGCGATCCTGCTGGCCGCCGGCACGCCGG
GCAAGCGCATGGCGCTCCCGAACGCCCGTGTGCTGATCCACCAGCCCTACAGCGAGACCGGCCGCGGCCAGGTCTCGGAC
CTCGAGATCGCCGCCAACGAGATCCTCCGGATGCGCTCGCAGCTCGAGGACATGCTGGCCAAGCACTCGACCACGCCGAT
CGAGAAGATCCGCGAGGACATCGAGCGCGACAAGATCCTCACCGCTGAGGACGCGCTGGCGTACGGGCTGATCGACCAGA
TCATCTCCACCCGCAAGATGAACAATTCCGCGGTCGTCTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(37-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

84.071

0.438
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

50

83.186

0.416
  clpP Streptococcus thermophilus LMD-9

46.154

86.283

0.398
  clpP Streptococcus thermophilus LMG 18311

46.154

86.283

0.398
  clpP Streptococcus mutans UA159

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. cremoris KW2

45.226

88.053

0.398
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

44.221

88.053

0.389
  clpP Streptococcus pyogenes JRS4

45.128

86.283

0.389
  clpP Streptococcus pyogenes MGAS315

45.128

86.283

0.389
  clpP Streptococcus pneumoniae D39

44.388

86.726

0.385
  clpP Streptococcus pneumoniae Rx1

44.388

86.726

0.385
  clpP Streptococcus pneumoniae R6

44.388

86.726

0.385
  clpP Streptococcus pneumoniae TIGR4

44.388

86.726

0.385