Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   OG467_RS29635 Genome accession   NZ_CP109589
Coordinates   6583416..6584075 (+) Length   219 a.a.
NCBI ID   WP_100594205.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01361     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 6578416..6589075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG467_RS29605 (OG467_29660) - 6578625..6579773 (-) 1149 WP_329573395.1 acyltransferase family protein -
  OG467_RS29610 (OG467_29665) - 6580309..6580503 (+) 195 WP_100594330.1 hypothetical protein -
  OG467_RS29625 (OG467_29680) tig 6581022..6582410 (+) 1389 WP_100594204.1 trigger factor -
  OG467_RS29630 (OG467_29685) clpP 6582754..6583362 (+) 609 WP_329581981.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG467_RS29635 (OG467_29690) clpP 6583416..6584075 (+) 660 WP_100594205.1 ATP-dependent Clp protease proteolytic subunit Regulator
  OG467_RS29640 (OG467_29695) clpX 6584231..6585517 (+) 1287 WP_329573396.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  OG467_RS29645 (OG467_29700) - 6585599..6586570 (-) 972 WP_329573397.1 hypothetical protein -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 24094.43 Da        Isoelectric Point: 4.4620

>NTDB_id=679279 OG467_RS29635 WP_100594205.1 6583416..6584075(+) (clpP) [Streptomyces sp. NBC_01361]
MNNIPGSGLYTGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISIY
INSPGGSFTALTAIYDTMQFVKPDIQTVCMGQASSAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAANE
ILRMREQLEEMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKMNSDAIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=679279 OG467_RS29635 WP_100594205.1 6583416..6584075(+) (clpP) [Streptomyces sp. NBC_01361]
ATGAACAACATCCCCGGCAGCGGCCTGTACACCGGCCCGCAGGTCGACAACCGCTACGTGATCCCGCGCTTCGTCGAGCG
CACCTCGCAGGGCGTGCGTGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGATCG
ACGACGCGTCCGCCAACGACGTCATGGCGCAGCTCCTGTGCCTGGAGTCGATGGACCCGGACCGTGACATCTCCATCTAC
ATCAACAGCCCCGGCGGCTCCTTCACGGCGCTCACGGCCATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCAGAC
GGTCTGCATGGGCCAGGCGTCCTCCGCGGCCGCCGTGCTCCTCGCCGCCGGTACGCCGGGCAAGCGCATGGCCCTGCCGA
ACGCCCGAGTGCTGATCCACCAGCCCTCCGGTGGCACCGGCCGTGAGCAGCTCTCCGACCTGGAGATCGCTGCGAACGAG
ATCCTCCGGATGCGTGAGCAGCTCGAGGAGATGCTGGCCAAGCACTCCACGACGCCGATCGAGAAGATCCGCGACGACAT
CGAGCGCGACAAGATCCTTACGGCCGAGGACGCCCTGGCGTACGGCCTGATCGACCAGATCATCTCCACCCGGAAGATGA
ACAGCGACGCTATCGCGTGA

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(30-210)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

52.105

86.758

0.452
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

49.468

85.845

0.425
  clpP Streptococcus thermophilus LMD-9

45.641

89.041

0.406
  clpP Streptococcus pyogenes JRS4

45.641

89.041

0.406
  clpP Streptococcus pyogenes MGAS315

45.641

89.041

0.406
  clpP Streptococcus thermophilus LMG 18311

45.641

89.041

0.406
  clpP Streptococcus pneumoniae R6

44.898

89.498

0.402
  clpP Streptococcus pneumoniae Rx1

44.898

89.498

0.402
  clpP Streptococcus pneumoniae D39

44.898

89.498

0.402
  clpP Streptococcus pneumoniae TIGR4

44.898

89.498

0.402
  clpP Streptococcus mutans UA159

45.128

89.041

0.402
  clpP Lactococcus lactis subsp. cremoris KW2

43.878

89.498

0.393
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

42.857

89.498

0.384