Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   MY525_RS15355 Genome accession   NZ_CP096018
Coordinates   3371819..3373927 (+) Length   702 a.a.
NCBI ID   WP_250656743.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12817     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3366819..3378927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY525_RS15335 pilM 3369023..3370087 (+) 1065 WP_250656739.1 pilus assembly protein PilM Machinery gene
  MY525_RS15340 - 3370087..3370650 (+) 564 WP_250656740.1 PilN domain-containing protein -
  MY525_RS15345 - 3370647..3371267 (+) 621 WP_250656741.1 type 4a pilus biogenesis protein PilO -
  MY525_RS15350 - 3371264..3371803 (+) 540 WP_250656742.1 pilus assembly protein PilP -
  MY525_RS15355 pilQ 3371819..3373927 (+) 2109 WP_250656743.1 type IV pilus secretin PilQ Machinery gene
  MY525_RS15360 - 3374448..3374765 (-) 318 WP_250656744.1 hypothetical protein -
  MY525_RS15365 - 3375096..3376790 (-) 1695 WP_250656745.1 Ig-like domain-containing protein -
  MY525_RS15370 aroK 3377174..3377659 (+) 486 WP_338081907.1 shikimate kinase AroK -
  MY525_RS15375 aroB 3377730..3378839 (+) 1110 WP_250656747.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 75318.61 Da        Isoelectric Point: 4.7360

>NTDB_id=679202 MY525_RS15355 WP_250656743.1 3371819..3373927(+) (pilQ) [Alkalimarinus coralli strain SCSIO 12817]
MNILNAEIDNKQLRSKNNMYYRALVLLSAVCLSLFSIQASAVVLKDISFASLAGDRTEVTLAFDGVPPEPKGYTIEKPAR
IALDLAGVTNSLSAKYHSLGVGNAQGLTVVSAKDRTRLIVNLVELVPYASTVDGNNIVLMIGSSDAPKGARAGSVKPAST
SSSSSASEPTVNNVDFRRGEKGDGQIVLTLSSSKIDVDMSEEGGVIKLALPGVSLPVSLQQRLDVVDFATPVKRVDSKMT
ASGAEISIKAQGNYDYLAYQADNQFTISVEELSAEEVDQRKKDKFPYTGEKLSLNFQDIEVRSVLQLIADFTGLNLVASD
TVGGRITLRLQNVPWDQALELVLKTKGLDKRKIGNVLLVAPADEIAAREKLELETNKQVAALAPVRLEVIQVNYAKAEDI
VALLQADKELISGRGFISSDERTNTISVRETADKQEQIRRLIATWDIPVRQVLIEARIVKARTNIASDLGVQWGGAVVDS
GTNHVGFGGGSYTTTSEISQGETITFPAANVVDLGVSKAGASSFALGFTNDHVLLQMELSALESDGRGEVVAQPKIVTAD
RQTATIKSGEEIPYQEASSSGATSVSFKEAVLSLEVTPQITPDGKVIMDLKINQDNRGEVTAGIPSIETNEIVTQVLVGN
GETVVLGGIFQTEVGTTITKTPFLGDIPYLGTLFKRTEKIDERAELLIFITPKLLNRGLIDN

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=679202 MY525_RS15355 WP_250656743.1 3371819..3373927(+) (pilQ) [Alkalimarinus coralli strain SCSIO 12817]
ATGAATATTTTAAATGCTGAAATCGATAATAAACAATTGAGGTCGAAAAATAATATGTATTATCGGGCGTTAGTGCTGCT
GAGCGCGGTTTGCTTGTCTCTATTTTCAATTCAGGCTAGTGCGGTTGTATTGAAAGATATCAGTTTTGCTTCCCTTGCAG
GGGACAGAACAGAAGTGACGCTTGCTTTTGATGGCGTTCCTCCTGAGCCCAAGGGTTATACCATCGAAAAACCGGCGAGA
ATAGCGCTGGATCTGGCGGGGGTAACCAACTCGCTTAGCGCGAAATATCATAGTTTAGGCGTGGGAAATGCCCAGGGGTT
AACCGTTGTCAGTGCGAAAGACCGAACCCGGCTTATTGTTAATCTGGTTGAGTTGGTTCCCTATGCTTCAACCGTTGACG
GTAACAATATTGTCTTGATGATCGGGTCATCGGACGCCCCTAAAGGTGCGCGTGCAGGGAGTGTAAAGCCCGCTTCAACT
TCGTCGTCCTCTTCTGCTTCAGAGCCTACAGTCAATAATGTTGATTTTAGGCGAGGGGAGAAAGGAGATGGGCAAATTGT
GTTGACGCTATCGTCCTCAAAGATTGATGTTGATATGTCTGAAGAGGGGGGGGTTATTAAGCTAGCCCTGCCTGGGGTGT
CTCTTCCTGTTTCGCTTCAACAGCGTTTAGATGTGGTTGACTTTGCGACCCCGGTTAAGCGTGTAGACTCTAAGATGACT
GCGAGCGGCGCAGAAATTTCTATTAAAGCTCAGGGTAACTACGATTACTTGGCTTATCAGGCTGATAACCAGTTTACTAT
TAGTGTAGAAGAGCTTTCTGCTGAGGAAGTAGATCAGCGTAAAAAAGATAAGTTTCCTTACACTGGCGAAAAGCTGTCGC
TCAATTTTCAAGACATTGAGGTTCGATCAGTCTTGCAGTTAATTGCTGACTTTACGGGGCTTAATTTGGTTGCCAGTGAT
ACCGTCGGTGGGCGTATAACCCTAAGGTTGCAAAATGTACCTTGGGATCAGGCGCTCGAACTTGTTTTGAAAACAAAAGG
GTTAGATAAACGTAAAATAGGTAACGTGCTGTTAGTTGCGCCTGCAGACGAGATTGCGGCGAGAGAGAAATTAGAACTTG
AAACTAATAAACAGGTTGCAGCATTAGCTCCCGTGCGGCTGGAAGTTATTCAGGTCAACTATGCAAAAGCTGAGGATATT
GTGGCTTTGTTGCAGGCTGACAAGGAGTTGATATCAGGGCGAGGGTTTATTTCGTCTGATGAAAGAACTAACACAATAAG
TGTGAGGGAGACTGCGGATAAACAGGAGCAGATTCGCCGGCTAATTGCGACTTGGGATATTCCAGTAAGACAGGTGCTTA
TTGAGGCGCGGATCGTTAAAGCAAGGACTAATATCGCAAGTGATCTGGGTGTGCAGTGGGGTGGAGCTGTTGTTGACTCA
GGCACCAATCACGTCGGTTTCGGCGGCGGCAGCTACACTACTACGTCTGAAATCTCGCAAGGAGAGACAATTACATTTCC
AGCGGCGAATGTGGTTGATTTGGGTGTGAGCAAGGCAGGTGCATCTTCGTTTGCTCTAGGTTTCACAAATGACCACGTAT
TATTGCAAATGGAACTATCTGCACTTGAGTCTGATGGTCGTGGAGAAGTTGTTGCTCAGCCCAAGATAGTAACGGCAGAC
CGTCAAACGGCGACGATTAAATCGGGCGAGGAAATTCCTTATCAGGAAGCTTCATCAAGTGGTGCTACATCAGTGTCCTT
TAAAGAGGCTGTATTGTCGCTTGAGGTTACTCCTCAGATTACGCCTGATGGCAAGGTTATTATGGATCTAAAGATCAATC
AGGATAACCGTGGTGAGGTGACGGCGGGAATACCAAGTATTGAAACCAATGAAATTGTTACTCAGGTGCTGGTTGGTAAT
GGTGAGACCGTCGTACTTGGTGGCATATTCCAAACAGAAGTGGGTACAACGATAACGAAAACACCATTTTTAGGGGATAT
TCCTTATCTAGGTACGCTCTTTAAACGAACCGAAAAGATTGACGAGAGGGCGGAGTTGTTAATTTTCATTACACCAAAGC
TGCTAAATAGGGGGTTAATAGATAACTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(315-361)

Bacterial type II/III secretion system short domain (Secretin_N)

(388-451)

Bacterial type II and III secretion system protein (Secretin)

(541-695)

AMIN domain (AMIN)

(54-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

50.498

100

0.506
  pilQ Acinetobacter baumannii strain A118

39.891

100

0.416
  pilQ Acinetobacter baumannii D1279779

39.891

100

0.416
  comQ Acinetobacter baylyi ADP1

40.252

100

0.409
  pilQ Legionella pneumophila strain ERS1305867

40.923

92.593

0.379
  pilQ Legionella pneumophila strain Lp02

40.923

92.593

0.379
  pilQ Neisseria gonorrhoeae strain FA1090

34.516

100

0.36