Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   MY525_RS15335 Genome accession   NZ_CP096018
Coordinates   3369023..3370087 (+) Length   354 a.a.
NCBI ID   WP_250656739.1    Uniprot ID   -
Organism   Alkalimarinus coralli strain SCSIO 12817     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3364023..3375087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY525_RS15320 - 3364671..3365330 (+) 660 WP_250656736.1 thiol:disulfide interchange protein DsbA/DsbL -
  MY525_RS15325 - 3365422..3366282 (+) 861 WP_250656737.1 endonuclease/exonuclease/phosphatase family protein -
  MY525_RS15330 - 3366350..3368833 (-) 2484 WP_250656738.1 penicillin-binding protein 1A -
  MY525_RS15335 pilM 3369023..3370087 (+) 1065 WP_250656739.1 pilus assembly protein PilM Machinery gene
  MY525_RS15340 - 3370087..3370650 (+) 564 WP_250656740.1 PilN domain-containing protein -
  MY525_RS15345 - 3370647..3371267 (+) 621 WP_250656741.1 type 4a pilus biogenesis protein PilO -
  MY525_RS15350 - 3371264..3371803 (+) 540 WP_250656742.1 pilus assembly protein PilP -
  MY525_RS15355 pilQ 3371819..3373927 (+) 2109 WP_250656743.1 type IV pilus secretin PilQ Machinery gene
  MY525_RS15360 - 3374448..3374765 (-) 318 WP_250656744.1 hypothetical protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38195.13 Da        Isoelectric Point: 4.1786

>NTDB_id=679201 MY525_RS15335 WP_250656739.1 3369023..3370087(+) (pilM) [Alkalimarinus coralli strain SCSIO 12817]
MFGLIGKKANTLIGVDISSTSVKLLEISKNGNRYRVESYGVEPLPPNAVVEKNINDAEAVGEVIKRVVAKSRTGQKQAAV
AVAGSAVITKTIQMAAGLSEQELENQITVEADQYIPYPLDEVSIDFEVQGPSEQNPDQVDVLLAACRKENVELREDSLEI
GGLEAKVVDVEAYAMERAFELIDAQMDVDADERTVAVVDIGATMTTLSVLADGHTIYTREQLFGGKQLTEEIQRRYGLSQ
EEAGLAKKQGGLPDDYDMEVLEPFKEAVVQQVARSLQFFFSSSQYNEVDMVVLAGGTASTTGIANMVQEKVGTTTIVANP
FANMALNSRVNASALSNDAPSLMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=679201 MY525_RS15335 WP_250656739.1 3369023..3370087(+) (pilM) [Alkalimarinus coralli strain SCSIO 12817]
GTGTTTGGGTTAATAGGAAAAAAAGCAAATACGCTCATTGGGGTCGATATCAGCTCCACTTCGGTTAAGCTGCTTGAGAT
CAGTAAAAACGGTAATCGCTATAGGGTTGAAAGCTATGGTGTGGAGCCGCTGCCTCCCAATGCTGTTGTTGAAAAAAATA
TCAATGATGCCGAAGCAGTAGGTGAAGTGATTAAGCGAGTCGTTGCAAAGTCCAGGACAGGGCAGAAGCAAGCTGCCGTT
GCTGTGGCAGGTTCTGCTGTTATTACTAAAACTATTCAGATGGCTGCTGGGCTGAGTGAGCAGGAGCTGGAAAACCAGAT
TACGGTTGAGGCAGACCAGTACATTCCCTATCCGCTTGATGAGGTATCCATTGATTTTGAAGTTCAAGGCCCTTCAGAGC
AAAATCCCGACCAGGTAGATGTATTGTTGGCTGCGTGCAGAAAGGAAAATGTTGAGCTTCGTGAGGACTCGTTAGAGATC
GGGGGGCTTGAAGCCAAGGTTGTTGATGTTGAGGCTTACGCTATGGAGCGGGCATTTGAATTGATAGATGCCCAGATGGA
CGTAGATGCAGATGAGCGCACAGTCGCTGTGGTTGATATTGGTGCAACAATGACTACATTGAGTGTGCTTGCAGATGGGC
ACACCATCTATACCCGTGAACAGTTATTTGGAGGAAAGCAACTGACTGAAGAGATACAGCGGCGATATGGACTGTCTCAA
GAAGAGGCTGGGCTCGCGAAGAAACAGGGAGGGCTTCCAGATGACTATGACATGGAAGTGCTTGAACCCTTTAAAGAGGC
GGTTGTTCAGCAAGTTGCGCGTTCGTTGCAATTTTTCTTCTCATCTAGTCAGTATAATGAAGTTGACATGGTGGTTCTTG
CAGGAGGAACTGCTTCCACAACGGGAATTGCGAATATGGTGCAAGAGAAAGTTGGAACCACAACGATTGTCGCAAACCCT
TTTGCAAATATGGCACTGAATTCACGGGTTAATGCGTCGGCTTTGAGTAATGATGCGCCATCTTTGATGATCGCGTGCGG
GTTGGCGATGAGGAGTTTTGATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

53.955

100

0.54
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449